| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_1066 |
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| Symbol | |
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| ID | 5752787 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS195 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009997 |
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| Strand | - |
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| Start bp | 1265796 |
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| End bp | 1266359 |
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| Gene Length | 564 bp |
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| Protein Length | 187 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641287330 |
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| Product | pilin, putative |
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| Protein accession | YP_001553502 |
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| Protein GI | 160874186 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4968] Tfp pilus assembly protein PilE |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00196226 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGATCC AACATTCTGA TAAATTGATA CAACGACATC AAACGGGTTT CACCTTAATA
GAGCTTGTGG TGGTCATCAT AGTGCTCGGT ATTTTAGCGG TAGTGGCCCT GCCAAAATTT
ATCAATGTGC AGCAAGATGC GCAAATCGCT ACAGTCAAAG CCGCAGGCGG TGGCTTTAAG
TCAGCGATCA ATCTGGCTCG CTCCGTTTGG GCGGTAAAAG TGGGCTCTGG TCCAAAAGAA
GACTTACCCG TATTTGGCAC GGCGCAATCT GAACAAGTGG ATTTCAACGC CTTCGGCTGG
CCTGCACAGC ACTATATCTT TGGTAATGAA GCCTCACCGT CGCTTGATAA TGTCGAAGAC
TGTATCTCGG TATGGGAAGT ATTATTCCAA AATACCCAAC CGAGTGTCTC GCGCTTAAAT
GTTGATGTGA CAGAAACCGA CTACAAAGCC AGTTATACCA ATCCTGGCCA GTGCACTTAT
TTCTATCGAA CAAACGACAA ACTCTCGATC AGTTATGACT CCCAAACCGG AGTCGTCATT
ACCGACACAG ATCCCAATAG TTAA
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| Protein sequence | MMIQHSDKLI QRHQTGFTLI ELVVVIIVLG ILAVVALPKF INVQQDAQIA TVKAAGGGFK
SAINLARSVW AVKVGSGPKE DLPVFGTAQS EQVDFNAFGW PAQHYIFGNE ASPSLDNVED
CISVWEVLFQ NTQPSVSRLN VDVTETDYKA SYTNPGQCTY FYRTNDKLSI SYDSQTGVVI
TDTDPNS
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