| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_0813 |
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| Symbol | tolC |
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| ID | 5752530 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS195 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009997 |
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| Strand | - |
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| Start bp | 951883 |
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| End bp | 953190 |
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| Gene Length | 1308 bp |
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| Protein Length | 435 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 641287075 |
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| Product | outer membrane channel protein |
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| Protein accession | YP_001553251 |
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| Protein GI | 160873935 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000621601 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.257824 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATTTA AGATCCATAA TTTATGCGCA GCATTAACAC TTGCGGCTTC CGCTTCAGCG
GTGCAAGCAG ATGATTTGTT GCAAATTTAT CAACAAGCAC TGACCAGCGA CCCGCTCGTA
TTGCAAGCCC AAGCCCAGCG TAATGGTTTG TTTGAACAAA TTGAACAAAA CCGTGCACCG
CTGTTGCCAA CCATTAGTGC AAACGTCGGT TACGACAAAG CTTGGAATGA TCCGAAGGAT
GATTCAAGTG GTCTAGTAGG TAGCCTGAAA TTAAATCAAG TTATCTATGA TCACAGTGCT
TGGGTCGGTT TAAGCCTTGC TGAGAAAGCC GCTTCTCAAG CTGATTCTGC CTATGCTTCA
GCATTACAAA ACCTGATTAC TCGTATCACT ACAGCCTATT TCAACGTATT AACGGCGAAA
GACAACTACG AGTTCCAAGG TGCAGAAAAA CGCGCGATCG AACGCCAACT TGAACAAACT
AAACAACGTT TTGCAGTGGG GTTAACCGCA ATTACCGATG TGCATGAAGC CCAAGCTCAA
TATGACTTAG CCTCAGCCAC TGAAATTTTA GCTGAAAACA CACTCGCTAA TAGCTATGAA
GCCTTACGTG AAATCACTGG CATCGATCAC AAGACAATTA ACGTGTTAGA TACCAACCGT
TTCTCGGCCG TTACGCCAGC GCCAACGTCG TCAAACGAAT GGTTGAAGAT TGCTGAAACC
AATAGCGTCG ATTTGATGAC TCAACGTATC GGTAAAGATA TCGCTCAAGA AACCATTAAG
CTTTATCAAG CAGGCCACAT GCCTTCTTTA AGCTTGAATG CAGGTTACAA CAAAGGTCTT
GAGCAAAAAA CCGGTAATAT CAATGAGCCT GACTTTGATA ACGTCAGTGT CGGTGTCAAC
TTAAGCATTC CGATTTTCGA AGGCTTTAAA GTGAGCTCAC AAGTTAATCA AGCGCAATTT
CAATATGTTG AAGCGAGTGA AAAACTTGAG CAAGTTTACC GCGGTGTAGT GAAAAACGTC
CGTAATAACT ACAACAACGT AGGCGCTTCT ATCAGCTCAA TCAAAGCCTA TGAGCAATCG
GTTATTTCAT CAGAAAGTGC ACTGAAAGCC ACTCAAGCGG GTTTCGAAGT CGGTACGCGT
ACTATAGTTG ACGTATTGAA CCGTACTCGT GACTTGTACG ACTCAAAACG TAAATTATCA
GATGCACGTT ATAGCTACAT CAACTCGGTC ATTGCCTTGA AGCAAGCAGC GGGTACATTG
AATGAAGATG ACGTGATTGC CATCAACAAT GGCTTAATTG CAGAGTAA
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| Protein sequence | MKFKIHNLCA ALTLAASASA VQADDLLQIY QQALTSDPLV LQAQAQRNGL FEQIEQNRAP
LLPTISANVG YDKAWNDPKD DSSGLVGSLK LNQVIYDHSA WVGLSLAEKA ASQADSAYAS
ALQNLITRIT TAYFNVLTAK DNYEFQGAEK RAIERQLEQT KQRFAVGLTA ITDVHEAQAQ
YDLASATEIL AENTLANSYE ALREITGIDH KTINVLDTNR FSAVTPAPTS SNEWLKIAET
NSVDLMTQRI GKDIAQETIK LYQAGHMPSL SLNAGYNKGL EQKTGNINEP DFDNVSVGVN
LSIPIFEGFK VSSQVNQAQF QYVEASEKLE QVYRGVVKNV RNNYNNVGAS ISSIKAYEQS
VISSESALKA TQAGFEVGTR TIVDVLNRTR DLYDSKRKLS DARYSYINSV IALKQAAGTL
NEDDVIAINN GLIAE
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