| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_0393 |
|---|
| Symbol | |
|---|
| ID | 5752103 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009997 |
|---|
| Strand | - |
|---|
| Start bp | 444930 |
|---|
| End bp | 445814 |
|---|
| Gene Length | 885 bp |
|---|
| Protein Length | 294 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641286651 |
|---|
| Product | transporter DMT superfamily protein |
|---|
| Protein accession | YP_001552834 |
|---|
| Protein GI | 160873518 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2962] Predicted permeases |
|---|
| TIGRFAM ID | [TIGR00688] rarD protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.725553 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.00047979 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGATC TTGAATACCG CAAAGGGATC CTACTCGCCG TCAGTGCTTA CTGTATGTGG
GGTTTTGCGC CTTTATATTT CAAATTACTC AACCATGTCT CTGCTACCGA AATTTTGCTC
CATCGCGTAA TTTGGTCGTT CGTGTTTATG CTGATCATCA TGCAATTTAT TGGCGGGTTC
TCACGCTTAC GCTTACTGTT TAAACAGCCT AAACAGTTGA TGGTTCTCAC CATTACCTCC
ATACTGATCG CGGGAAACTG GCTGCTATTT ATCTGGGCGG TGAATAACGA TCACATGCTT
GATGCCAGCT TAGGTTACTT TATCAACCCT CTGCTCAACG TCTTGCTTGG TATGTTATTT
CTAGGCGAAA GGTTACGTAA GCTGCAATGG TTTGCGGTCG CACTCGCCAG TGCTGGTGTG
TTGATCCAAT TAATCTCTTT TGGCTCGATT CCAATTGTCT CACTGGCACT CGCGGGCACC
TTTGGTTTCT ATGCGCTGCT GCGAAAAAAG GTCAATGTGG ATGCTAAGGC TGGCTTATTG
GTCGAAACCG CAGTGTTATT ACCCGTCGCG CTAATTTACC TAGTCGCGAC CTTAGACACA
GCAACAGCGA GCATGCTGAC CAACGATTGG CAACTGAATC TGATGTTAAT GGCAGCGGGA
ATAGTGACCA CGATTCCTTT ACTCTGTTTT GCAGGGGCGG CGGTACGTAT TCCATTGTCT
ATGCTTGGAT TTTTCCAATA TATCGGCCCA AGTATCATGT TCATCCTAGC AGTGAGTCTG
TTCAATGAGC CCTTCGATGC AGAAAAAGGC GTGACCTTCG GTTTTATCTG GAGTGCCCTG
TTAGTCTTTA CCTTAGACAT GGCCTATAAA CGCAAAACGG CGTGA
|
|---|
| Protein sequence | MQDLEYRKGI LLAVSAYCMW GFAPLYFKLL NHVSATEILL HRVIWSFVFM LIIMQFIGGF
SRLRLLFKQP KQLMVLTITS ILIAGNWLLF IWAVNNDHML DASLGYFINP LLNVLLGMLF
LGERLRKLQW FAVALASAGV LIQLISFGSI PIVSLALAGT FGFYALLRKK VNVDAKAGLL
VETAVLLPVA LIYLVATLDT ATASMLTNDW QLNLMLMAAG IVTTIPLLCF AGAAVRIPLS
MLGFFQYIGP SIMFILAVSL FNEPFDAEKG VTFGFIWSAL LVFTLDMAYK RKTA
|
|---|
| |