| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_0193 |
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| Symbol | rpoB |
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| ID | 5751899 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS195 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009997 |
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| Strand | + |
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| Start bp | 236074 |
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| End bp | 240042 |
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| Gene Length | 3969 bp |
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| Protein Length | 1322 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641286448 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_001552635 |
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| Protein GI | 160873319 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.146327 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.0018171 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | TTGGATATCC CTTATTTATT GTCTATCCAG CTAGACTCTT TTAAGAAGTT CACCGATCAA
GATCCTACCG GTGAGCGCGG TTTAGAAGCC GCCTTCCGTA GCGTTTTTCC CATCAAGAGC
TTTTCTGGTA ATTCAGAACT GCAATACGTC AGCTATAAGC TTGGCGAGCC TGTTTTTGAT
GTGAAAGAGT GTCAGATCCG TGGTGTTACG TACTCAGCTC CACTACGCGT TAAATTACGC
ATGGTGTTGT ATGACCGTGA AGCAGCGGCG GGCACAGTAA AAGATATTAA AGAACAAGAA
GTCTACATGG GTGATATCCC ATTGATGACG GATAACGGTA CTTTTGTTAT CAATGGTACT
GAGCGTGTAA TCGTCTCTCA ATTACATCGT TCTCCAGGCG TGTTCTTTGA TCATGACCGT
GGTAAAACCC ACTCATCAGG TAAGGTGCTG TATAACGCAC GTATTATTCC TTACCGTGGT
TCATGGCTTG ACTTTGAATT CGATCCTAAA GATGCACTAT TTGTGCGTAT TGACCGTCGC
CGCAAATTGC CTGCGACCAT CATGTTACGT GCATTAGAAT ATTCTACTCA AGAGATCCTC
GATCTGTTCT TTGAACGCGT TGAGTTCAAG ATCAAGAAAG ATACTCTGGT TATGGCTTTG
GTTCCTGAGC GTCTACGTGG CGAAACAGCC AGCTATGACA TCAAGGATGC TGAAGGTTCT
GTATTGGTTG AAGCCGGTCG TCGTATCACT GCGCGCCACA TTCGCCAATT AGAAAAAACC
AATACCACCG AGCTCGAAGT GCCAGTTGAA TATATCGTGG GCAAATATGC TGCTCAAGAT
TATATCGATC CGGACACGGG TGAAGTTTTA GTCTCTGCCA ACAGCGAAAT TAGCCTAGAA
GATCTGGCTA AATTATCATT GGCCGGTATT AAAGAACTCA GCACGTTGTA TATCAACGAG
CTAGATCATG GTGCTTATAT TTCAGATACG CTGCGTATCG ATTCAACCAC TAACCGCTTA
GAAGCGCTGG TTGAGATCTA TCGTATGATG CGTCCTGGCG AGCCACCAAC CAAAGATGCT
GCCGAAGCAC TATTCCAGAA CTTGTTCTTC AGTGAAGAGC GTTATGACCT GTCTAAAGTA
GGTCGTATGA AGTTCAACCG TCGTCTCAGC ATTCCTGATG ACGAAGGTAG CGGTGTATTG
TCTAAAGAAG ACATCGTCGC GGTAATGAAA AATATCATTC ATATCCGTAA CGGTTTCGAC
GAAGTCGATG ATATCGATCA CTTAGGTAAC CGTCGTATTC GTAGCGTCGG TGAAATGGCT
GAAAACCAAT TCCGCGTAGG TTTAGTCCGT GTTGAGCGCG CCGTGCGTGA ACGTCTATCT
TTAGGCGATC TGAACGAGCT GATGCCACAA GACTTGATCA ACGCTAAGCC AATTTCTGCT
GCAGTGAAAG AGTTCTTCGG TTCTTCTCAG CTGTCACAAT TCATGGACCA AAACAACCCG
CTATCAGAAG TAACGCATAA GCGTCGTATT TCTGCTCTTG GCCCCGGTGG TTTGACTCGT
GAACGTGCAG GCTTCGAAGT CCGCGACGTA CATCCAACGC ATTATGGTCG TTTATGTCCA
ATTGAGACCC CTGAAGGTCC AAACATTGGT CTAATCAACT CATTAGCAAG TTTTGCCCGT
ACTAACTCAT ACGGCTTCCT AGAAACGCCA TACCGCAAGG TTATCGACGG CGTGATTACT
GACGAAGTGG AATACTTGTC AGCAATCGAA GAAGGTCGTT ATGTGATTGC ACAGGCGAAC
ATTGAAATTG ATGCGAACGG TCGTATGGCA GAAGAGCAAA TTGCTTGTCG TCATAAAGGT
GAATCTACCT TTATGCGCGC TGCTGACATC CAGTATATGG ACGTTTCGCC ACAACAGATT
ATTTCAGTTG CTGCGTCGCT CATCCCGTTC TTAGAACACG ATGATGCTAA CCGTGCATTG
ATGGGTGCGA ACATGCAACG TCAAGCCGTA CCAACACTGC GCTCTGAAAA GCCGCTAGTA
GGTACTGGCA TTGAACGTAC TCTTGCTGTT GACTCAGGTG TTGTGGTTGT TGCTAAGCGT
GGTGGTTTTG TAGACTACGT TGATGCGAGC CGTATCGTTG TTAAGGTAAA TGAAGATGAG
CTACGCCCAG GCGAAGCCGG TATCGACATT TATAACCTGA CTAAGTACAC GCGTTCTAAC
CAAAACACTT GTATCAACCA ACGTCCTTGT TGTTCAGTTG GTGAGCCAGT GGTTCGCGGT
GACGTGTTAG CAGACGGTCC GTCTACTGAC TTAGGTGACT TAGCCCTTGG CCAGAACATG
CGTATCGCGT TCATGCCTTG GAACGGTTAC AACTTCGAAG ATTCGATCTT AATTTCTGAG
CGCGTAGCGC AAGAAGACCG TTTCACCACT ATCCATATTC AGGAGCTGTC TTGTATTGCT
CGTGATACTA AGTTGGGTAG CGAAGAAATC ACGGCTGATA TTCCAAACGT AGGTGAGTCT
GCTCTGTCGA AACTCGACGA GTCAGGTATC GTTTACATTG GTGCAGAAGT GAAGGGCGGC
GATATTCTGG TTGGTAAAGT GACGCCAAAA GGCGAAACAC AGCTAACGCC AGAAGAGAAG
TTATTGCGAG CTATCTTCGG TGAGAAAGCG TCTGACGTTA AAGACAGTTC ACTGCGTGTA
CCTAACTCTG TTAAGGGTAC TATCATCGAC GTTCAGGTAT TTATCCGTGA CGGCGTTGAG
AAAGACAAGC GTGCAGTTGA AATCGAAGAG ATGCACATTG CCCAAGCTCG TAAAGACTTA
GGTGAAGAGT TCAAGATCCT TGAAGAAGGT GTATTGAGCC GTGCGCGTAA CTTGTTAATC
GGTGCTGGTT TCACTGACGC GCAAATTGCT GCCTTGCCAC GTAAAGATGT TTTGATTCAA
GTCATTGACG ATGAAACTAA ACAAACTGAA CTTGAGCAAT TGGCTGAACA GCATGAAGAG
CTGAAAGCTG ACTTCGATAA GAAGTTTGAA ATCAAACGTC GCAAGATCAC CCAAGGTGAT
GACTTGGCTC CAGGCGTACT CAAGATTGTT AAGGTTTACT TAGCGGTTAA GCGTACTATC
CAACCTGGTG ACAAGATGGC GGGTCGTCAC GGTAACAAGG GTGTTATCTC TAAGATTTGC
CCAATCGAAG ACATGCCGTA TGACGAACAA GGTAACCCAG TAGACATCGT ATTGAACCCA
CTAGGTGTTC CATCACGTAT GAACATTGGT CAGGTACTTG AAGTCCATAT GGGCGCCGCT
GCCAAAGGCA TTGGTAACAA GATCACTGCG ATGCTTGAAG AACAGCGTGA GCTGGCTGAA
GTTCGTGGCT ACATCAAACA AGTTTATGAA TTAGGTGACG AAGTGCAACA GCGCGTCGAT
ATCGATTCAT TCACTGATGA TGAAGTATTA CGTCTTGCGA CTAACCTGAA AGGCGGTATC
CCGATTGCAA CTCCTGCATT CGATGGTGCT AAAGAGAAAG AGATCAAGCA GATGCTTGAA
CTTGCAGGTT TGCCAACTTC TGGTCAGTTG AAGTTGTTTG ATGGTCGTAC CGGTAACGAA
TTTGAGCGTC AAGTAACAGT TGGTTACATG TACATGCTCA AACTGAACCA CTTAGTTGAT
GACAAGATGC ACGCCCGTTC TACAGGTTCG TACAGCTTAG TGACTCAACA ACCACTGGGC
GGTAAAGCTC AGTTCGGTGG TCAGCGTTTC GGTGAGATGG AAGTGTGGGC ACTAGAAGCA
TACGGTGCCG CTTATACGCT TCAAGAAATG CTCACTGTTA AATCGGATGA CGTTAACGGT
CGTACTCAGA TGTATAAGAA CATCGTCGAC GGTAACCATC AGATGCAACC TGGCATGCCA
GAGTCCTTCA ACGTGTTACT GAAGGAGATC CGTTCACTCG GTATTAATAT CGAGTTGGAT
CAGGCATAA
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| Protein sequence | MDIPYLLSIQ LDSFKKFTDQ DPTGERGLEA AFRSVFPIKS FSGNSELQYV SYKLGEPVFD
VKECQIRGVT YSAPLRVKLR MVLYDREAAA GTVKDIKEQE VYMGDIPLMT DNGTFVINGT
ERVIVSQLHR SPGVFFDHDR GKTHSSGKVL YNARIIPYRG SWLDFEFDPK DALFVRIDRR
RKLPATIMLR ALEYSTQEIL DLFFERVEFK IKKDTLVMAL VPERLRGETA SYDIKDAEGS
VLVEAGRRIT ARHIRQLEKT NTTELEVPVE YIVGKYAAQD YIDPDTGEVL VSANSEISLE
DLAKLSLAGI KELSTLYINE LDHGAYISDT LRIDSTTNRL EALVEIYRMM RPGEPPTKDA
AEALFQNLFF SEERYDLSKV GRMKFNRRLS IPDDEGSGVL SKEDIVAVMK NIIHIRNGFD
EVDDIDHLGN RRIRSVGEMA ENQFRVGLVR VERAVRERLS LGDLNELMPQ DLINAKPISA
AVKEFFGSSQ LSQFMDQNNP LSEVTHKRRI SALGPGGLTR ERAGFEVRDV HPTHYGRLCP
IETPEGPNIG LINSLASFAR TNSYGFLETP YRKVIDGVIT DEVEYLSAIE EGRYVIAQAN
IEIDANGRMA EEQIACRHKG ESTFMRAADI QYMDVSPQQI ISVAASLIPF LEHDDANRAL
MGANMQRQAV PTLRSEKPLV GTGIERTLAV DSGVVVVAKR GGFVDYVDAS RIVVKVNEDE
LRPGEAGIDI YNLTKYTRSN QNTCINQRPC CSVGEPVVRG DVLADGPSTD LGDLALGQNM
RIAFMPWNGY NFEDSILISE RVAQEDRFTT IHIQELSCIA RDTKLGSEEI TADIPNVGES
ALSKLDESGI VYIGAEVKGG DILVGKVTPK GETQLTPEEK LLRAIFGEKA SDVKDSSLRV
PNSVKGTIID VQVFIRDGVE KDKRAVEIEE MHIAQARKDL GEEFKILEEG VLSRARNLLI
GAGFTDAQIA ALPRKDVLIQ VIDDETKQTE LEQLAEQHEE LKADFDKKFE IKRRKITQGD
DLAPGVLKIV KVYLAVKRTI QPGDKMAGRH GNKGVISKIC PIEDMPYDEQ GNPVDIVLNP
LGVPSRMNIG QVLEVHMGAA AKGIGNKITA MLEEQRELAE VRGYIKQVYE LGDEVQQRVD
IDSFTDDEVL RLATNLKGGI PIATPAFDGA KEKEIKQMLE LAGLPTSGQL KLFDGRTGNE
FERQVTVGYM YMLKLNHLVD DKMHARSTGS YSLVTQQPLG GKAQFGGQRF GEMEVWALEA
YGAAYTLQEM LTVKSDDVNG RTQMYKNIVD GNHQMQPGMP ESFNVLLKEI RSLGINIELD
QA
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