| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | P9211_13451 |
|---|
| Symbol | lpd |
|---|
| ID | 5730908 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prochlorococcus marinus str. MIT 9211 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009976 |
|---|
| Strand | - |
|---|
| Start bp | 1212745 |
|---|
| End bp | 1214190 |
|---|
| Gene Length | 1446 bp |
|---|
| Protein Length | 481 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 641285716 |
|---|
| Product | dihydrolipoamide dehydrogenase |
|---|
| Protein accession | YP_001551230 |
|---|
| Protein GI | 159903886 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1249] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes |
|---|
| TIGRFAM ID | [TIGR01350] dihydrolipoamide dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0908915 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCGAAG CAAACTTTGA ATTTGACCTG ATCGTCATAG GCGCTGGATA TGGCGGCTTT
GATGCTGCTA AGCATGCTGC CGAGCATGGT TTAAGTGTCG CGATTATTGA ATCACGAGAA
ATGGGAGGTA CATGTGTCAA TAGAGGCTGT GTCCCCTCAA AGGCTTTGCT TGCGGCAAGC
GGGAAAGTTA GAGAGCTGGC AGATGCTGAA CACCTTTCGT CCTTTGGTAT TCATGCTGCA
CCAGTTCGCT TTGAGAGAAG AAAGATAGCT GAGCATGCTA ATCAATTAGT GAAGAACATT
CGAAATAATT TAACTAAGGC GCTTGAGCGT TCGGGTGTAA AGATCTTGAG AGGGTATGGA
CGAATAGAAG GTACCCAGAA AGTTGGCTTA CGAGAAAGTA ATGGTGTGGA TCGCTTAATT
TCGGCTAAGG ATATTGTCAT TGCTACAGGT TCAGATCCAT TTGTTCCGCC AGGGATAGAA
ACTGATGGAC GTACTGTTTT TACTAGTGAT GAAGCTATTA ATCTTGAGTG GTTACCTCGT
TGGATAGCAA TTATTGGTAG TGGATATATC GGCCTTGAAT TTGCTGATGT TTACACAGCA
TTAGGTTGCG AAGTAACAAT GATCGAAGCT TTGGAAAGAG TTATGCCGAC ATTTGATACT
GATATTGCAA AAATTGCCGG GAGAAATTTG ATCCAAGGAA GAGATATAGA TGCTAGGGCT
GGTGTTTTGG CAAGTAAAGT TTCTCCTGGC TGTCCAGTGA AGATTGAATT GTCCGATGTC
AAAAACCGGG AGTTGCTAGA AGAATTGGAA GTAGATGCAG TTTTAGTAGC AACAGGCAGA
GTCCCAACGA GTGCAGGCTT AAACTTAGAG TCAGTTGGAG TTAAAACTAA TCGTGGTTAT
ATCCCCATTG ATGATTCAAT GAGGGTTCTT GTTGACGGTA AGCCTCTAAA GAATCTTTGG
GCTGTTGGAG ATGTCACTGG AAAACTAATG CTTGCTCATA CAGCAGCTGC TCAAGGGACG
GTAGCAGTCG ATAACATCCT TGGTAAAAAT AGAGAAATTG ATTATCGAAG TATTCCTGCT
GCGACATTTA CACACCCTGA AATTAGCTCG GTTGGCATGG CGGAATCAGA GGCAAAGGAG
TTCGCTGAAA AAAATAATTT TGAACTTGGC ATTGTCAGGA GTTACTTTAA AGCAAACTCA
AAAGCATTGG CAGAGTTGGA AAGTGATGGA TTAATGAAAT TACTTTTTAG GAAAGATAAT
GGTGAAGTAT TAGGAGCACA TATTTATGGA CTACATGCTG CAGATTTAAT ACAGGAAGTT
GCAAATGCAG TTGCAAGACG ACAGAAAGTC AATGAATTGG CTATTGAAGT CCATACTCAC
CCAACACTTA GTGAAGTAAT AGAGGTTGCC TATAAACAGG CTGTTGCTCA ATTAAAACAG
TCTTAG
|
|---|
| Protein sequence | MSEANFEFDL IVIGAGYGGF DAAKHAAEHG LSVAIIESRE MGGTCVNRGC VPSKALLAAS
GKVRELADAE HLSSFGIHAA PVRFERRKIA EHANQLVKNI RNNLTKALER SGVKILRGYG
RIEGTQKVGL RESNGVDRLI SAKDIVIATG SDPFVPPGIE TDGRTVFTSD EAINLEWLPR
WIAIIGSGYI GLEFADVYTA LGCEVTMIEA LERVMPTFDT DIAKIAGRNL IQGRDIDARA
GVLASKVSPG CPVKIELSDV KNRELLEELE VDAVLVATGR VPTSAGLNLE SVGVKTNRGY
IPIDDSMRVL VDGKPLKNLW AVGDVTGKLM LAHTAAAQGT VAVDNILGKN REIDYRSIPA
ATFTHPEISS VGMAESEAKE FAEKNNFELG IVRSYFKANS KALAELESDG LMKLLFRKDN
GEVLGAHIYG LHAADLIQEV ANAVARRQKV NELAIEVHTH PTLSEVIEVA YKQAVAQLKQ
S
|
|---|
| |