| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | P9211_09271 |
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| Symbol | mfd |
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| ID | 5730520 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Prochlorococcus marinus str. MIT 9211 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009976 |
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| Strand | + |
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| Start bp | 821147 |
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| End bp | 824656 |
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| Gene Length | 3510 bp |
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| Protein Length | 1169 aa |
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| Translation table | 11 |
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| GC content | 34% |
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| IMG OID | 641285293 |
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| Product | transcriptional-repair coupling factor |
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| Protein accession | YP_001550812 |
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| Protein GI | 159903468 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.254503 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0000230767 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCATTAG AACCAATAAT TGACAAATTA AAAGAATCGT CTTTAACTTC TCAATTAATA
GAACGGATAC AACGAAATAA CAGATTAATC TTAACGGGAG GTTCAAAAAC TGCTAAAACT
ATTATATCAA CCACAATTTC AAAAGCTGAG AAACTACCAC TAATAGTCAT TGTTCCAACA
TTAGAAGAAA CAACAAGATG GTATTCAATT CTAAATAATT TCTCTTGGGA TTCACTTTAT
ATATATCCAA CATCAGAAAA TTCCCCATAT GAATCTATAC CACCGACAAC TGAGATATTA
TGGGGACAAT TACAAGTTTT GACTGAGCTT TGCTCTAATG ATACTAATAA CATCGCCATA
GTTACAACAG AAAGAGCTCT TCAACCACAT TTACCTCCAA AGGACTCTTT TTTAACATCA
TGCCTATCTT TAGTTAAGGA AAATATATTT GATCTAGATA AGTTAGCCAT TAATTTAACA
AACCTTGGAT ATTCTAAAAC AACTACTACC GAAGAGGAAG GTCAATGGAG TCGAAGAGGC
GATATCTTGG ATATTTATCC GGTCAACTAT GAATCTCCAA TACGGTTAGA ATTTTATGGC
GATAATATAG ATAAAATAAA GGAATTCGAC CCAGTTTCTC AACGTTCTCT TGATGAAATA
AATCAGGTAA TAATCTCACC GGTCAACTTT GATATATTAA TAGCGAATAA GCTATCTTCT
TTCACTCCAG AAATTCTGGC TAAATATTTT GACGCCGACT CTATCGATAA GCTTAAAAAT
AATATAATAC CTTCTGGTAT AAGACGTTAT CTAGGACTAG CCTGGACAAG CCCTTCTTCC
CTTATAGATT TTATAGATAA TTCATCACTA ATTATTACAG ATGAACCAAA TCAATGTAAT
TCCCATTCAA CAGCCTGGAC AGAGCATGTC TCAGAAACCT ATCATCAATT AGAAACTAAT
TTAGAGTTAA ATGATAATAA TTTAGCTCTT CCTCCAAATA ACCTTCATTC TACTTTTACT
ACTAATTATG ACTTGCTAAA TGGATTTTAT GGCTTAGATA CTACAGATTT TATTGATCAA
TATAATAGAG AGAATATATT TGATATTTCC TCCAAACAAA TTCTTACCTA TCCAAATCAA
TTCGGAAGGT TAAGTGAAAT GCTCAAGAAA TATCAAAATG ATAAGTTTAA AATCTTTATT
TATTCAGCCC AACCTAGTAG AACTAGCTCT CTGCTAAATG AACACGATTG TATTTCAGTA
TTCGTAGAAA ATTCTAAAGA TAGCTTACGC ATTAAGACAT TACTAGATCA AAATACACCT
GTTGCTCTCA GAAGTTCATC AAACTTTGAT TTAGAAGGGA TTAATTTTCT TCCTTGGAAA
ATACTTCTAC TAACAGATAA GGAATTTTAT GGACAACAAC TTGTCAGTCA TAGTGGTTAC
GTAAGGAGAA GAAAAAGATC AGCTAGTAAA AGTATTGATC ATAATAAATT AAGAACTGGG
GACTATGTTG TACATAGAAA TCATGGTATA GGTAAATTCA TTAAAATAGA AAAATTTGTT
ATCTCTCAAG AAAGTAGAGA TTATTTATTA GTCCAGTATC AAGACGGTAC TTTACGTGTA
GCCGCAGATC AACTTGGTTC TCTTGGCCGC TATAGATCAT CTTCTGACAA ATCACCTAGG
ATTGGAAAGT TAGGAGGTAC AGCTTGGCTT AATGCAAAGG AAAAAGCACG AAAATCAATT
AACAAAGTTG CTATAGATTT AATTAGGCTT TACGCAGAGA GGAATAAAAC TGAGGGCTAT
AGTTTCCCTC CTGATGCTCC TTGGCAATCT GAACTTGAAG ATGCATTCCA ATATGAGCCT
ACTCATGATC AACTCACTGC AATTAAGGAT GTCAAAAATG ATATGGAAAA ACCCAAACCC
ATGGATAGAC TTGTTTGTGG CGATGTTGGC TATGGAAAAA CGGAAGTAGC GATTAGGGCT
CTTTTTAAAG CTATTATATC CGGAAAACAA GCAGCATTAC TCGCTCCAAC AACTATCCTA
TCTCAACAGC ATTGGCGTAC GTTATCTGAT CGATTTGCTC CTTATCCAAT TAAAATTGCG
CTTTTAAATC GATTCAAGAC TTCAAGAGAA AAGAATGCAA TTGTAGAAGA ACTGAAAAGC
GGAACTATAG ATTTAGTTGT AGGTACCCAT TTAATACTTT CCAACAAGGT TTGTTTTAAA
GATTTAGGTT TATTAGTAGT TGATGAAGAG CAACGGTTTG GTGTAAAGCA AAAGGAGCGT
ATTAAACAAT TTAAAAAAAA TATAGATGTT CTTACTCTTA CTGCTACACC AATTCCTAGG
ACTTTGTATA TGAGTCTATC GGGAGTTAGA GAAATGAGTC TTATTACTAC CCCCCCTCCT
CTACGAAGGG CTATTAAAAC TCATTTAATT CCCTATGAGG AAGAAGCAAT CAGAAGTGCT
ATATGCCAGG AGATTGATAG AGGAGGTCAA ATATTTTATG TCGTCCCACG AATTGAAGGT
ATAACTGATA TTGCTACAAA ATTAAGTAAT ATGATTCCGA AAATAAGAAT ATTAATAGCA
CATGGTCAAA TGGATGAAGG TGAATTAGAA AGCTCAATGA TAGCTTTTAA TGACTGGGAA
GCAGACTTAA TGCTTTGTAC TACAATAGTT GAGAGCGGTT TAGACATTCC TAGAGTTAAT
ACAATATTAA TTGAGGATGC TCAGCAGTTT GGCCTGTCAC AGCTTTATCA ATTAAGAGGA
AGAGTTGGTC GCAGTGGTGT TCAGGCTCAT GCTTGGCTAC TTTATCCAAG TAATACGACA
ATTAATGATA AAGCTAAGCA ACGATTACAA GCAATCCAGG AATTTAGCCA ATTAGGAAGT
GGGTATCAAT TGTCTATGCG TGATATGGAA ATAAGAGGGG TTGGAAACTT AATAGGCCTA
CAGCAGAGTG GACAGATGGA AGCAATTGGT TTTGATATGT ATATGGAAAT GCTACAAGAA
TGTATTTCAG ATCTAGAAGG ACATGAAATA CCAAAAGTTG ATGAAACTCT TATAGATTTA
CCAATTAACG CATTTATACC AGGTAATTGG ATAGTTGATA ACCAAGAAAA AATTTCAGCT
TATAAGGCAG CAACTGATTG CCATACATCA GGAAAACTTA TTGAATTGGG TCTTGCATGG
TCAGACAGAT ATGGTGCCTT GCCTAAACCT GTCTCCTCGT TAATGCAAGT AATGCAAATT
AAACTAGTCG GTAAAAGTTT AGGATTTTCC CGTATTCGGC AGATAAAACC AAATATTATT
TTAGAAACTA AAATGAAGGA ATCTACTTTT AAAGTTCTTA GGAATGGAAT CGATAAGAGC
TTACACAGTA GGATACTATA TAAGAAAGGC AATTCTTCTT CGGAGGTATT ACTTAGAGGA
CTTGCGAATC AACCCATCGA AAAACAGTTG GATATCCTAT TTGAATGGCT ATCCAAAATG
AAGGATGCTA CAACAAACCT AGAATTATAA
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| Protein sequence | MSLEPIIDKL KESSLTSQLI ERIQRNNRLI LTGGSKTAKT IISTTISKAE KLPLIVIVPT
LEETTRWYSI LNNFSWDSLY IYPTSENSPY ESIPPTTEIL WGQLQVLTEL CSNDTNNIAI
VTTERALQPH LPPKDSFLTS CLSLVKENIF DLDKLAINLT NLGYSKTTTT EEEGQWSRRG
DILDIYPVNY ESPIRLEFYG DNIDKIKEFD PVSQRSLDEI NQVIISPVNF DILIANKLSS
FTPEILAKYF DADSIDKLKN NIIPSGIRRY LGLAWTSPSS LIDFIDNSSL IITDEPNQCN
SHSTAWTEHV SETYHQLETN LELNDNNLAL PPNNLHSTFT TNYDLLNGFY GLDTTDFIDQ
YNRENIFDIS SKQILTYPNQ FGRLSEMLKK YQNDKFKIFI YSAQPSRTSS LLNEHDCISV
FVENSKDSLR IKTLLDQNTP VALRSSSNFD LEGINFLPWK ILLLTDKEFY GQQLVSHSGY
VRRRKRSASK SIDHNKLRTG DYVVHRNHGI GKFIKIEKFV ISQESRDYLL VQYQDGTLRV
AADQLGSLGR YRSSSDKSPR IGKLGGTAWL NAKEKARKSI NKVAIDLIRL YAERNKTEGY
SFPPDAPWQS ELEDAFQYEP THDQLTAIKD VKNDMEKPKP MDRLVCGDVG YGKTEVAIRA
LFKAIISGKQ AALLAPTTIL SQQHWRTLSD RFAPYPIKIA LLNRFKTSRE KNAIVEELKS
GTIDLVVGTH LILSNKVCFK DLGLLVVDEE QRFGVKQKER IKQFKKNIDV LTLTATPIPR
TLYMSLSGVR EMSLITTPPP LRRAIKTHLI PYEEEAIRSA ICQEIDRGGQ IFYVVPRIEG
ITDIATKLSN MIPKIRILIA HGQMDEGELE SSMIAFNDWE ADLMLCTTIV ESGLDIPRVN
TILIEDAQQF GLSQLYQLRG RVGRSGVQAH AWLLYPSNTT INDKAKQRLQ AIQEFSQLGS
GYQLSMRDME IRGVGNLIGL QQSGQMEAIG FDMYMEMLQE CISDLEGHEI PKVDETLIDL
PINAFIPGNW IVDNQEKISA YKAATDCHTS GKLIELGLAW SDRYGALPKP VSSLMQVMQI
KLVGKSLGFS RIRQIKPNII LETKMKESTF KVLRNGIDKS LHSRILYKKG NSSSEVLLRG
LANQPIEKQL DILFEWLSKM KDATTNLEL
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