Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | P9211_04961 |
Symbol | |
ID | 5730552 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Prochlorococcus marinus str. MIT 9211 |
Kingdom | Bacteria |
Replicon accession | NC_009976 |
Strand | - |
Start bp | 464840 |
End bp | 466117 |
Gene Length | 1278 bp |
Protein Length | 425 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 641284855 |
Product | RNA polymerase sigma factor RpoD |
Protein accession | YP_001550381 |
Protein GI | 159903037 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain [TIGR02937] RNA polymerase sigma factor, sigma-70 family [TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.147427 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTCCTG TCGCCTCCAA AAAAACAGTT GCAAAGGCTA AAACCAAAGC AACAAAAAAG TCCAGCACAA AGGCTGGTGA GAGTAAAACA TTGAAAAAAG GGAAATCAAT CTCCGTTACA AAAAAATCAA AGCCTAGCTC TACGAAGAAA GCTTCCTCAT CGCAAGACAA AGACTTAGAT CTCGCAGCGG ACCAATTACT TGCAGAAGCT AATAACAATG AAATCAATCC AGAAACAGAA ATAACCTTGA ATATGAATTC TCTGGATGAT TCAAATGACC AAGAGGCTAG TGACAAAACT CTTGCAAGTA TAAAAATTGG ACCAAAGGGA GTTTATACAG AAGACTCAAT CAGAGTGTAT TTACAAGAAA TTGGCCGCAT TAGATTACTT AGGCCTGATG AAGAAATTGA ACTCGCAAGG AAGATTGCAG ATCTTCTAAA TTTAGAAGAA ATCGCTATCC AGTTTGAAAG CGAAAATGGA CATTACCCCT CCAAAAAAGA GTGGGCTGCG TTGGTTGAAA TGCCAGTCAT AAGGTTTCGC CGGAGACTAA TGCTTGGAAG GCGTGCGAAA GAAAAAATGG TTCAATCAAA CCTTCGCTTA GTTGTTTCAA TAGCTAAAAA ATATATGAAT AGAGGACTTT CATTCCAAGA TCTGATTCAA GAAGGAAGTC TGGGGCTTAT TCGTGCAGCA GAGAAATTCG ACCATGAAAA AGGCTATAAG TTCTCCACTT ATGCAACTTG GTGGATTCGT CAAGCAATTA CAAGAGCGAT TGCAGATCAA AGTAGAACAA TTAGGCTTCC TGTCCACCTT TACGAAACAA TTTCAAGAAT CAAAAAAACA ACCAAAGTTC TAAGTCAAGA ATTTGGGAGA AAACCTTCAG AAGAAGAAAT TGCAGAGAGT ATGGAGATGA CTATTGAAAA GCTTCGCTTT ATTGCGAAGA GTGCTCAGTT ACCGATTTCT TTAGAAACTC CTATAGGTAA AGAAGAAGAC TCACGTCTTG GTGATTTCAT TGAATCAGAC TCAGAGAACC CTGAATTAGA TGTTGCCAAA ACACTACTTC GCGAGGACCT AGAAGGAGTT CTCGCAACTC TGAGCCCAAG AGAACGAGAT GTCCTAAGAC TTCGTTATGG ACTTGATGAT GGTCGTATGA AGACCCTTGA AGAAATTGGG CAAATATTTG ATGTAACCCG CGAGCGTATC CGTCAAATTG AAGCAAAAGC TCTACGCAAA CTTCGTCATC CAAATCGCAA TGGAGTGCTT AAAGAATACA TTAAATAA
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Protein sequence | MSPVASKKTV AKAKTKATKK SSTKAGESKT LKKGKSISVT KKSKPSSTKK ASSSQDKDLD LAADQLLAEA NNNEINPETE ITLNMNSLDD SNDQEASDKT LASIKIGPKG VYTEDSIRVY LQEIGRIRLL RPDEEIELAR KIADLLNLEE IAIQFESENG HYPSKKEWAA LVEMPVIRFR RRLMLGRRAK EKMVQSNLRL VVSIAKKYMN RGLSFQDLIQ EGSLGLIRAA EKFDHEKGYK FSTYATWWIR QAITRAIADQ SRTIRLPVHL YETISRIKKT TKVLSQEFGR KPSEEEIAES MEMTIEKLRF IAKSAQLPIS LETPIGKEED SRLGDFIESD SENPELDVAK TLLREDLEGV LATLSPRERD VLRLRYGLDD GRMKTLEEIG QIFDVTRERI RQIEAKALRK LRHPNRNGVL KEYIK
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