| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | P9211_04471 |
|---|
| Symbol | ccmA |
|---|
| ID | 5731156 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prochlorococcus marinus str. MIT 9211 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009976 |
|---|
| Strand | + |
|---|
| Start bp | 422267 |
|---|
| End bp | 423280 |
|---|
| Gene Length | 1014 bp |
|---|
| Protein Length | 337 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 641284804 |
|---|
| Product | putative multidrug efflux ABC transporter |
|---|
| Protein accession | YP_001550332 |
|---|
| Protein GI | 159902988 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1131] ABC-type multidrug transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR01188] daunorubicin resistance ABC transporter ATP-binding subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.797798 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCACTGG TTGAACTGCA TGATCTCGTG AAGTCTTATG GCTCAGTAAA GGCTTTGAAT
AAATTGAGCT TAAGAGTTCC GGAGGGCTCT CTTTTTGGTC TTCTTGGTCC GAATGGTTCC
GGTAAGAGTA CTACTTTGAG AATCCTTTGT ACTTTGTTAG CACCGGATTC AGGTAATGCG
ATAGTGGCAG GCGTAGATGT TTTAAAGAAC CCTCGCTATA TAAGGCAAAA CATTGGTTAT
GTAGCTCAGG AAATTGCAAT TGATAAAATC CTTTCTGGAA GAGAACTTCT CCAATTACAT
GGCGATCTTT ATCATTTGAG TAGAAATGAT CGGGATCTAC GTATAGAAGA GTTGGTTCGT
CAACTTGAGA TGGGTGAATG GGTTGATCGA CGCTTAGGTT CTTATTCAGG CGGTATGAAA
AGAAGGCTTG ACCTTGCTTC TGGTTTACTG CATCAGCCCA AGTTATTGAT TTTGGATGAA
CCAACCGTTG GCTTGGACAT AGAGAGTAGG TCAACGATCT GGAACTTATT AAGAGATCTT
CGAGAAAAAG GAACAACAAT TCTTCTTAGT AGTCATTACC TTGAGGAGGT TGATGCACTC
GCTGACCAGA TGGCGATTAT TGACAAAGGA CAAGTCATTG GGTATGGATC ACCTCAAGAG
CTTAAAGATA AATTAGGAGG TAATCGCATA ACACTTAAAG TGAGGGAATT TAGTGATGAA
AGAGAATCAG AGAAAATAAA ACAATTGGTA AAAGAAATTG AGGGAGTGGG AAAAGTTGTT
GTGAATAGAG CACAGGGATT CTCATTAAAC CTTGTCGTTG ATGATCAAGA TGTTTTGCAA
AAGTTGAGGG CAAAGTTAAC TGAGTCAGGA TTCGATGTAT TCGCTTTATC TGAAAGTCGA
CCAAGCTTGG ATGATGTTTA CTTGCAGGCA ACTGGCCGAA CAATTGCAGA TGTAGAATTG
GAGGTAGCTG GCAAGCGGGA TATTAAGGGC GAGGCAAAGA AGTCAATGAG GTGA
|
|---|
| Protein sequence | MSLVELHDLV KSYGSVKALN KLSLRVPEGS LFGLLGPNGS GKSTTLRILC TLLAPDSGNA
IVAGVDVLKN PRYIRQNIGY VAQEIAIDKI LSGRELLQLH GDLYHLSRND RDLRIEELVR
QLEMGEWVDR RLGSYSGGMK RRLDLASGLL HQPKLLILDE PTVGLDIESR STIWNLLRDL
REKGTTILLS SHYLEEVDAL ADQMAIIDKG QVIGYGSPQE LKDKLGGNRI TLKVREFSDE
RESEKIKQLV KEIEGVGKVV VNRAQGFSLN LVVDDQDVLQ KLRAKLTESG FDVFALSESR
PSLDDVYLQA TGRTIADVEL EVAGKRDIKG EAKKSMR
|
|---|
| |