| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MmarC6_1454 |
|---|
| Symbol | |
|---|
| ID | 5739140 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanococcus maripaludis C6 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009975 |
|---|
| Strand | + |
|---|
| Start bp | 1355427 |
|---|
| End bp | 1356674 |
|---|
| Gene Length | 1248 bp |
|---|
| Protein Length | 415 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 641283955 |
|---|
| Product | LOR/SDH bifunctional protein |
|---|
| Protein accession | YP_001549499 |
|---|
| Protein GI | 159905837 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1915] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR00300] conserved hypothetical protein TIGR00300 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTCATGA GAGAAATTGA ATTAAAAGGA CATATAATTG ACAGCTTTAT ACTCGCAAAA
GTATTTGACA GAACTTTAGA ACTTGGCGGG GATTACAAAG TTTTAGAATT TGATATCGGA
AAGAAAAAAA CTGATCCTTC ATATGCAAAA CTGTTAATTT CTGGAACTAC TGAACAGCAT
CTTGACCAGA TTCTCGAAGA ACTTCAAAAT GTTGGTGCAA ACATCCCTGA AATTGAAAAT
GCTAATTTAA AACCTGCTTT AAAAGATAGC GTGTTACCTG ATGGATTTTA TTCAACTACA
AATCACCCAA CACACGTAAA AGTAAATGAA GAATGGATAG AAGTTGCAAA TCCAAAAATG
GATGCGGTAA TTGTTGTTTA TCCTGAAGAA AAAAGGGCAG AAACAAAAGT AATGAGGAAA
ATTAAAAAAG GAGATTTCGT AGTAATTGGC CACAACGGAA TCAGAGTAAT GCCTCCTGAA
AAGTCAAGAG AAGCAGGACA GCTTTTTGAA TTCATGAACT CAGAAGTATC CTCTGAAAAG
CCAAAAGAAG CGATTATTAA AAGAATTGCA CAGGAAATGT ACGAAATGAG AGAAGAATAT
AAAAAAACCG GAACAGGAGG AATTGCAATT GTTGGCGGCC CTGCAATTAT ACACACTGGC
GGTGGCCCCG CTTTAGCAAA AATGGTTGAA CTTGGATATA TTCAGGCAAT TTTGGCAGGA
AATGCACTCG CAACGCACGA TATCGAATCA GCACTCTTTG GAACTTCGCT TGGGGTAGAT
ATAAAAACTG CAAAACCCGT AACTGGTGGA CACAAACACC ACATCTACGC CATAAATACG
ATAATCGATG CAGGATGCAT TAAAAATGCA GTAGAAAGCG GCGTATTAAA AGAAGGTATA
ATGTACCAGT GTGTAAAAAA TGAAGTTCCA TACGTGCTTG CGGGAAGTAT TCGGGACGAT
GGACCACTTC CAGATGTTAT AACTGATGCT ATGGTTGCAC AGGATGAAAT GAGGACTTCA
GTGATGGATA AAAAAATGGT TATCATGCTT TCAACACTTT TACACTCTGT TGCAACTGGT
AACTTAATGC CTTCGTACAT AAAAACAGTT TGTGTCGATA TACAGCCTTC AACAGTTACT
AAATTAATGG ATAGGGGAAC TTCACAGGCT ATCGGAGTAG TTACTGATGT AGGGGTGTTC
TTAGTTCTGT TATTAAAAGA ATTAGAAAGA CTTGAATTAC AGGAATAA
|
|---|
| Protein sequence | MFMREIELKG HIIDSFILAK VFDRTLELGG DYKVLEFDIG KKKTDPSYAK LLISGTTEQH
LDQILEELQN VGANIPEIEN ANLKPALKDS VLPDGFYSTT NHPTHVKVNE EWIEVANPKM
DAVIVVYPEE KRAETKVMRK IKKGDFVVIG HNGIRVMPPE KSREAGQLFE FMNSEVSSEK
PKEAIIKRIA QEMYEMREEY KKTGTGGIAI VGGPAIIHTG GGPALAKMVE LGYIQAILAG
NALATHDIES ALFGTSLGVD IKTAKPVTGG HKHHIYAINT IIDAGCIKNA VESGVLKEGI
MYQCVKNEVP YVLAGSIRDD GPLPDVITDA MVAQDEMRTS VMDKKMVIML STLLHSVATG
NLMPSYIKTV CVDIQPSTVT KLMDRGTSQA IGVVTDVGVF LVLLLKELER LELQE
|
|---|
| |