| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MmarC6_0309 |
|---|
| Symbol | valS |
|---|
| ID | 5739009 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanococcus maripaludis C6 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009975 |
|---|
| Strand | + |
|---|
| Start bp | 280473 |
|---|
| End bp | 283133 |
|---|
| Gene Length | 2661 bp |
|---|
| Protein Length | 886 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 641282773 |
|---|
| Product | valyl-tRNA synthetase |
|---|
| Protein accession | YP_001548362 |
|---|
| Protein GI | 159904700 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0525] Valyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00422] valyl-tRNA synthetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAATAA AAGAAGAATA TTCAATAGAA CTTGAAAATA AAGTTCAAGA AAAATGGGAA
AACGAAAAAA CATTCAAATT CTTGGAAGAT GATAAAAGGC CACCATATAT TATAGATACT
CCACCGCCAT ATCCAACAGG CAGAATGCAC CTTGGACACG GGCTTAACTG GACATATATG
GACATTATTG CGAGATTTAA AAGAATGAAT GGATACGATG TGCTTTTCCC CCAAGGCTGG
GACTGCCACG GACTTCCAAC CGAAGTTAAA GTCGAAGAAT TAAACAATAT CACAAAGTCT
GACATTGACA GACACGAATT TAGAAGACTC TGTGTAGAAT TGACTGATGA AAACGTAGAA
AAAATGAGGG GCCAGGTTAA ATCACTTGGA ATCTCAATTG ACTGGGATAG AGAATATATT
ACAATGAATC CAGACTACGT TAGAAAATCA CAGACTGCAT TTTTGAAAAT GTACGAAAAA
GGGTTAATTT ACAGGGGAAA ACACCCGGTA AACTGGTGCC CAAGATGTGA AACTGCTATC
GCATTTGCAG AAGTAGAATA TCAAGAAAGA ACTTCAAAAT TAAACTACAT AAAATTCCCA
TATGCAGAAA ATGCTGAAAA ATATCTTGAA ATTGCAACTT CAAGACCAGA ATTAATGGCT
GCTTGTGTTG GAATCGTTGT ACATCCTGAG GATGAACGAT ACAGCGACGT TATTGGAAAA
ACCGTTAGAG TTCCATTATT TAATCAGGAA GTTACAGTTT ACCCTGATTC CGATGTAGAA
CAAGATTTTG GTACTGGAGT TGTAATGGTT TGTACTTTTG GTGACAAAAC CGACGTTACA
TGGGTAAACA GGCACAAATT AGAAGTTAAA AAAGCAATTA ATGAAAAAGG ACAATTAACA
GAAATCTGCG GAAAATATGC AGGTAAAAAA TCAGACGATG CAAGAAAAGA GATTATTTCC
GATTTAATTT CTGAAGACTA CATGATAAAA CAAGACCCAC TTGAACAGAA CGTTGGTTCA
TGCTGGAGAT GTAAAACCCC TATCGAGATC ATTGTTGGAG ACCAGTGGTT TGTAAACGTT
ACAAAGTTAT TAAAAGAAGT GGAAAACGCT GCAAACGAAA TTTCATGGGT TCCAGAACAT
ATGAAAGCAA GACTTTTAAA ATGGGTCGAA GATATGGGCT GGGACTGGTG TATTTCAAGA
CAGAGATTGT TTGCAACCCC AATTCCGGTA TGGTACTGTA AAGACTGTGG GGAAATCATT
GTAGCTAAAC CTGAAGATTT ACCAATAGAT CCAACAAAAG AAAGCCCGTA CACATGTAAA
TGTGGAAACT CAAAGCTTGT TGCTGAAACC GATGTTTTAG ACACCTGGAT GGATTCATCA
ATTACCCCAC TCGTTATAGC AGGATGGCTT GAAGATGATG AATTCTTCAA AAAACACTAC
CCTGTTCAAT TAAGACCTCA AGGCCACGAT ATCATCAGAA CCTGGGCTTT TTACACGATT
GTTAGATCAC TTGCAATCAC CGGCGAAAAA CCATGGGATG AAATCGTAAT TAACGGAATG
GTTTTCGGTG AAGACGGATT TAAGATGAGT AAAAGTAGGG GAAACGTTGT TGAACCTGGA
GAAATTACCA AAACTTACGG TGCAGACGCT TTAAGGTTAT GGGCTTCAAA CAGCACCATT
GGAAAGGACG TTCCATTCGC CTGGAAAGAA GTAGAATACG GTGGAAGGTT TTTGCGAAAA
ATATGGAATG CATGTAAATT TGCAAAAATG AACATTTCTG ATGAAGTAAT TTCTGAATTG
AAATCTTTAA AATCCATTGA AATTGAAAAT CCTGTTGATT TATGGATTTT GAGTAAATTA
AATGATTTAA TTTCAAAAGT TTCAAAAGAT CTTGGAAATT ACAAGATAAA CACAGTTGTA
GAAATTCAAA AATTCTTATG GCATGAATTC TGTGATAACT ACATCGAAAT GGTAAAACAC
AGGCTTTATA CCAAAGAAGA ATCTGAAAGC GCTCAAAAAG AAAAATTAAT GGCACAATAC
ACGCTGTATA AGGTAATTAC AGAATCCGTA AAATTACTTA CGCCATTTAC GCCACACTTT
GCAGAAATTG TCGGACAAAT CTACGAAATT GATGATTTGC ATATCTCATG GCCAGTTGCA
GATGAAAGCT TGATAAGTTT AGAAAACGAA TTTGTCGGAG AAGTTGCAAA AAATACGGTT
GCATCGATTA GAAGATACAA ATCAAACAAA GGAATGCCAC TTAATGCAGA ATTAAACAAA
GTTGAAATGT ATGTAAGCGA TGAAAAAGAT TTCAATGCTC TTTCAAAAGC TTCAGAAGAT
ATTGAAAAGT CTTTGAAAAT TAAAGAACTT GAACTAAATC TTGGAAAACC ACTCCTCGAA
CAAAAAATTG CAGAAGTGAC TCCGAACAAG TCCAAAATCG GTCCAGAATT TAAAAAAGAT
GCTGGAAAAG TAACTGCATT TATCAAAGAA GCTGATGCAG AAACAATTGA AAAAATCCTT
TCGGAAGGAA TTGAAACCGA ATTTGGTGCT TTAAACAAAG AACACATCAA AGAAGTAAAA
AGAGCGATAT ATAACAAAGG AGAAATTGTT GAAACTGCAG ATATCGACAG TTTAATCGAT
ACTATTGCAA TAATTCAATA A
|
|---|
| Protein sequence | MEIKEEYSIE LENKVQEKWE NEKTFKFLED DKRPPYIIDT PPPYPTGRMH LGHGLNWTYM
DIIARFKRMN GYDVLFPQGW DCHGLPTEVK VEELNNITKS DIDRHEFRRL CVELTDENVE
KMRGQVKSLG ISIDWDREYI TMNPDYVRKS QTAFLKMYEK GLIYRGKHPV NWCPRCETAI
AFAEVEYQER TSKLNYIKFP YAENAEKYLE IATSRPELMA ACVGIVVHPE DERYSDVIGK
TVRVPLFNQE VTVYPDSDVE QDFGTGVVMV CTFGDKTDVT WVNRHKLEVK KAINEKGQLT
EICGKYAGKK SDDARKEIIS DLISEDYMIK QDPLEQNVGS CWRCKTPIEI IVGDQWFVNV
TKLLKEVENA ANEISWVPEH MKARLLKWVE DMGWDWCISR QRLFATPIPV WYCKDCGEII
VAKPEDLPID PTKESPYTCK CGNSKLVAET DVLDTWMDSS ITPLVIAGWL EDDEFFKKHY
PVQLRPQGHD IIRTWAFYTI VRSLAITGEK PWDEIVINGM VFGEDGFKMS KSRGNVVEPG
EITKTYGADA LRLWASNSTI GKDVPFAWKE VEYGGRFLRK IWNACKFAKM NISDEVISEL
KSLKSIEIEN PVDLWILSKL NDLISKVSKD LGNYKINTVV EIQKFLWHEF CDNYIEMVKH
RLYTKEESES AQKEKLMAQY TLYKVITESV KLLTPFTPHF AEIVGQIYEI DDLHISWPVA
DESLISLENE FVGEVAKNTV ASIRRYKSNK GMPLNAELNK VEMYVSDEKD FNALSKASED
IEKSLKIKEL ELNLGKPLLE QKIAEVTPNK SKIGPEFKKD AGKVTAFIKE ADAETIEKIL
SEGIETEFGA LNKEHIKEVK RAIYNKGEIV ETADIDSLID TIAIIQ
|
|---|
| |