| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_5196 |
|---|
| Symbol | |
|---|
| ID | 5737154 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009973 |
|---|
| Strand | - |
|---|
| Start bp | 282582 |
|---|
| End bp | 283679 |
|---|
| Gene Length | 1098 bp |
|---|
| Protein Length | 365 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 641282360 |
|---|
| Product | anti-sigma-factor antagonist |
|---|
| Protein accession | YP_001547951 |
|---|
| Protein GI | 159901705 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG1366] Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) |
|---|
| TIGRFAM ID | [TIGR00377] anti-anti-sigma factor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.476105 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACAGC TCTTTGCGTG GTTATCATTT ATCGATCATC CGGTGGACGA TGTCCGGCGA
CGCGGCCAAG TGGTGATCGG TATCCTGTGT TCGCTCCTCG TCATCGCCGT CATGGGCCTC
TTCTCATTGC TGGGTGATCC CGTGCAGCAT GGCGCGGCGG GTTCCATCGT CTTCAGCATC
GGCCTGTTCC TCAGCTTGAT TTTCATCGTG CGCCGGGGGT ACGTTGCGCT GGGGGGATGG
TTGGTCGTGC TTGCCACCAC GCTCAGCGTT GTCCTGCCGC AGGTAATCGC TGGGTTTAGC
AATCAGTCCT TGGCCTATGC CTTGATTCCC GCCTTGATTG CCGGTGTTGT GTTCCGTCCA
TGGCAGATCC TGCTCGTCGC GATTGGGCTG ACGATGGTCA TTCTCGGAAT GGTCTGGATG
CTGCCGCCCG ATCCACAGGT CATGCCAACA CAGCGGTCGA TCATAACGCA TGCCAGCTTG
ATGACCTTCG TCAGCGCGAT CATTGGGTTT GTCGCGAGTG ATGTGAACCA TCGCGCCTTT
AAGACGATTC GTGATGGACA GCACCACATC GCGCAGCAGC ACCATGACCT GATGGTCATC
AACCGCCATT TGGCACAGCA GGCTGACGAA CAAACTGCCG CTGTCGCAAC CACGGTGCAA
CACTTGCAGG AACGAACCAG CGTGCAGGAA CGCCTTCTCG CCACGGTAAC GCTGCAACGT
GAGACGATTC GGGCCATGAG TATCCCGGTC TTACCCGTCG CCCCGCAGGT GGTCGTGATC
CCCTTAATCG GAGTCCTTGA TAGTGCCCGA CTCGTCCTCT TGCGGGACGG GGCGTTAGCC
GCCATCCAGC GGTATACGGC CAACCACCTT ATCCTTGATA TGACCGGGGT TGAGATCGTG
GATAGCCAGG TCGCCAGCGG CATGATGCAG GTGATTCAGG CAGCGCACCT CTTAGGAACG
CACATGCTGC TTGTGGGGGT GCGGCCGGAA GTCGCGCAAA CGATGGTGGC TTTAGGCCTT
GACTTGGGGT CGATTGATAC CGCCGCAACG GTGTATGAAG GAGTCCACCG CATTCAGCAT
ACAGGAAGCG GTGAATGA
|
|---|
| Protein sequence | MKQLFAWLSF IDHPVDDVRR RGQVVIGILC SLLVIAVMGL FSLLGDPVQH GAAGSIVFSI
GLFLSLIFIV RRGYVALGGW LVVLATTLSV VLPQVIAGFS NQSLAYALIP ALIAGVVFRP
WQILLVAIGL TMVILGMVWM LPPDPQVMPT QRSIITHASL MTFVSAIIGF VASDVNHRAF
KTIRDGQHHI AQQHHDLMVI NRHLAQQADE QTAAVATTVQ HLQERTSVQE RLLATVTLQR
ETIRAMSIPV LPVAPQVVVI PLIGVLDSAR LVLLRDGALA AIQRYTANHL ILDMTGVEIV
DSQVASGMMQ VIQAAHLLGT HMLLVGVRPE VAQTMVALGL DLGSIDTAAT VYEGVHRIQH
TGSGE
|
|---|
| |