| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_4614 |
|---|
| Symbol | |
|---|
| ID | 5736461 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009972 |
|---|
| Strand | + |
|---|
| Start bp | 5900505 |
|---|
| End bp | 5901494 |
|---|
| Gene Length | 990 bp |
|---|
| Protein Length | 329 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641281778 |
|---|
| Product | type II secretion system protein |
|---|
| Protein accession | YP_001547373 |
|---|
| Protein GI | 159901126 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4965] Flp pilus assembly protein TadB |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAATT TACCACCATG GACAATTCCC TTAATCATTG CGTTAGTTCT CTTTGCTGCT
GGGGCGATTA TCTTTCGTAA GCTGAAAGAA ACCAAATCCA ACTCGGTTGA TGGTCGTTTA
GCGACCTTTG CCGAACGCAA TCGCAGCCAA ACTGACAGCA ATGAACGGGG TATGAGTGCC
TTGGCCAGTC GGGTTGATTC CATGGTCAAC CGTGGTCAAA AAGGCTCAGA TTTAGCCCGC
GATTTAGCTC AGGCCGACCT TAAACTGACC GTAACTGAAT TTATTATGTT CAAATTCGGC
TCGGTGATCT TATTTGCCTT GTTTGGGGTC TTTTTGGGCC GTGCCAACTT TTTGGCAGTG
GTTGCTGGTG GGGTCGTCGG CGCGATTATT GGCTTTATTG TGCCCGATAA AGTCGTGAGC
TTTAAGCAAG GCTCACGCTT GAAGGCTTTC AATAATCAAT TAGGCGATAC GGTTGGTTTG
TTGGCCAACT CGTTGCGCTC TGGCTATAGT TTGCTCCAAT CGATGGATTT GGTTTCGCGT
GAAGCGCCAC CACCGATTTC AGTTGAGTTT CGTCGTGTCG TCCAAGAGGT TGGTTTAGGC
CTCTCACTCG AAGATGGCAT GAATAATCTC TTGCGCCGCG TTCCAAGCGA TGACCTTGAT
CTGATGGTTT CGGCGATTAA TATTCAGGCT GAGGTTGGGG GTAACCTGGC CGAGATTCTG
GATACGATTG CCCATACCAT TCGTGAGCGG GTTCGGATCA AAGGCCAAAT TCGGGTGCTT
ACCTCACAAG CTCGCTATTC TGGCTATGTG GTGACCTTCC TGCCAATTTC GATTGCTGTG
ATTATCACCA TGCTTAACCC AGATTATATG GCTCCACTGA TGACGATTGG GATGCCACCA
GATGCTTGGT GTTGTATGCC CGTATGTAGC GCAATGATGA TGATTGGAGG GTTCTTCGCA
ATCAAAAGCA TTGTTAATAT TGAAATCTAA
|
|---|
| Protein sequence | MANLPPWTIP LIIALVLFAA GAIIFRKLKE TKSNSVDGRL ATFAERNRSQ TDSNERGMSA
LASRVDSMVN RGQKGSDLAR DLAQADLKLT VTEFIMFKFG SVILFALFGV FLGRANFLAV
VAGGVVGAII GFIVPDKVVS FKQGSRLKAF NNQLGDTVGL LANSLRSGYS LLQSMDLVSR
EAPPPISVEF RRVVQEVGLG LSLEDGMNNL LRRVPSDDLD LMVSAINIQA EVGGNLAEIL
DTIAHTIRER VRIKGQIRVL TSQARYSGYV VTFLPISIAV IITMLNPDYM APLMTIGMPP
DAWCCMPVCS AMMMIGGFFA IKSIVNIEI
|
|---|
| |