| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_3692 |
|---|
| Symbol | |
|---|
| ID | 5735541 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009972 |
|---|
| Strand | + |
|---|
| Start bp | 4644463 |
|---|
| End bp | 4645848 |
|---|
| Gene Length | 1386 bp |
|---|
| Protein Length | 461 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 641280844 |
|---|
| Product | MATE efflux family protein |
|---|
| Protein accession | YP_001546456 |
|---|
| Protein GI | 159900209 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0534] Na+-driven multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000025823 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAATTC CATTAGGCGC AGCACAGGGG CGAAGCAGCC AACGGAGTGC TGTATTAAAG
TTGGGCTTGC CAGCAGTTGG CGAGCAATTA TTGAGTTTGA TGGTTGGGTT GGTTGATACC
TATGTGGTGG GACACTTGAG CTTAGCCGTC GCAACTGCCA ATGGCTACGA TCGCCAAATC
GCCTTGGCAG CGACCGGCAT TTCGAGCCAA GTCACATGGA CATTAATCAC CTTTTTTATG
GCAGTAGCCC TCGGTAGCAC GGTGGTTATT GCGCGGTTTG TGGGGGCAGG CGAGCGCGAA
CAAGCCAACC AAACCCTGCG CCAAGCCCTG CTAATTGGGC TAGCCATGGG CCTGCTGAGT
TTATTTTTGG CCTATAGCTT TGCCCCTCAA CTGATGGATT TACTCGGCGC AAACGAGCAA
GTGCGCCAAT ATGGGGCTGG CTATTTGCGT ATTTCCGCCT TATCAATGCC CTTAATGGCC
ATGCTTTACG TGGGCAATGC CGCCTTACGT GGCTCCGGCG ATACGCGCAC CCCACTCAAG
GTTATGCTGG TCGTCAATGG GATCAACGCA GGGTTATCGT TGCTCTTGGT CAATGGCTAT
TTTGGTTTTC CGGCGATGGG GATTAATGGG GCAGCATTTG CCGCGATGAG TGGGCAAGGC
ATCGGTGGCT TAATGGTGCT TGCAACACTG ATTCGTGGCC GTTCAGGCTT GAAGCTTGAT
CAAATTCCAC GCCCAGATGG CAATTTGATC TGGCGGATTT TACGCCAAGG GCTGCCATAT
GGGGCTGAGC AATTTATTTT TCAGGCCGCA TTATTAATTT TTATCCATTT GATCAACGAT
ATTGGCACGG CGGCTTATGC TGCGCATAAC ACCATTATCA CGATTGAAAG TATTTCGTTT
TTGCCAGGCA TGGGCTTGGC GGTAGCCGCC ACAACCTTAG TCGGCCAACA TATGGGAGCA
AATCAGCCAC AACAAGCTAG CGAAAGTGGC TTTGAGGCAT TTCGGCTGGG AGCACTCTTC
ATGGGGGCAA TTGGCTTATT GTTTGTAGTT GCGCCAGAAG TCTTTTTGCG CTTTTTCGTT
GCTGACGAAG AGGTAGTGCA ACTCGCCGCC TTACCGTTGC GCATGGTTGG GTTTGCTCAG
CCCGCTTTGG CCGCTAATTT CATCTTCAGC GGCAGTTTAC GTGGTGGTGG CGAGCCAAAA
TGGCCACTGA TTAGCAAAAT GCTGAGTGTT TGGTGTGTCC GCTTACCGCT GGCATGGCTG
CTTGTCAAGC ACTTCGACCT TGGCTTGAAT GGCATTTGGC TGGCAATGTG TACCGATTTT
GCCGTCCAAG GCAGCTTGGC ATGGTGGCGC TTCCGACAAG GCAAATGGCA AAGTGCAAAA
GTTTAG
|
|---|
| Protein sequence | MAIPLGAAQG RSSQRSAVLK LGLPAVGEQL LSLMVGLVDT YVVGHLSLAV ATANGYDRQI
ALAATGISSQ VTWTLITFFM AVALGSTVVI ARFVGAGERE QANQTLRQAL LIGLAMGLLS
LFLAYSFAPQ LMDLLGANEQ VRQYGAGYLR ISALSMPLMA MLYVGNAALR GSGDTRTPLK
VMLVVNGINA GLSLLLVNGY FGFPAMGING AAFAAMSGQG IGGLMVLATL IRGRSGLKLD
QIPRPDGNLI WRILRQGLPY GAEQFIFQAA LLIFIHLIND IGTAAYAAHN TIITIESISF
LPGMGLAVAA TTLVGQHMGA NQPQQASESG FEAFRLGALF MGAIGLLFVV APEVFLRFFV
ADEEVVQLAA LPLRMVGFAQ PALAANFIFS GSLRGGGEPK WPLISKMLSV WCVRLPLAWL
LVKHFDLGLN GIWLAMCTDF AVQGSLAWWR FRQGKWQSAK V
|
|---|
| |