| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_3492 |
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| Symbol | |
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| ID | 5735353 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009972 |
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| Strand | - |
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| Start bp | 4397666 |
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| End bp | 4399348 |
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| Gene Length | 1683 bp |
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| Protein Length | 560 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 641280639 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_001546256 |
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| Protein GI | 159900009 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[R] General function prediction only |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific
[COG1092] Predicted SAM-dependent methyltransferases |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCACATCG AAATTCTCTA CCGCGACGAG CAAATCCTGG TGATCAATAA ACCAACCGGG
GTGGCAACCC ACGCACCCCA AGGCGATTTG GCATTAACCG ATGTTGAACG CGCTTTGCGT
GCCCAATTGC AACTTGAGTA TTTGGCGATT CATCAGCGGC TAGATCGCGA TACCTCGGGC
GTGATGCTGT TTGCGCTTGA CCCCGCCGCC AATGCCAATT TGGCCACGGC CTTTGCTGAA
CATACGATTG AGAAAACCTA CCAAGCCTTG GTGTATGGCG TGCCCATCCA AACTCAAGGG
GTCATCGATG CTGCGCTTGC GCCTGCTGGC GATGGCATGA TCCAGGTTGC CTCAGCCCAT
GATCGGCGTG CTCAATCAGC AATTACGCAT TATCGGGTCT TGGTCAGCAG TCCTGATCAG
CGATTTAGCT TGTTGGAATT ACAGCCAAAA ACTGGCCGAA CTCACCAATT GCGGGTGCAC
TGCGAATGTT TGGGCCATCC AATTGTTGGC GATCCGCTGT ATGATGTGGC GCGAGCTGCC
CCCCGACTGA TGCTGCATGC CAGCGAATTA CGCTTCACCC ACCCGCTTAC TCAACAACCA
TTGCATATTC AAGCGCCAAC TCCAGCCTTA TTCACGCGGG TGGCGCAAGG CTTGCCCGAA
TTACAACAAA GCACCGAGCT AGCTGCGCTG AATGGCTTAA TCGAGTTAGC GGCTGAACGG
CGGGCTGTCC TGGCAGCCGA TCCTGCTACG ACGATCTTTC GGGTGTTTCA TGGCCCAAGC
GATGGTCTGA CCCATCCATG GTTGCAGCAT TGGACGGTCG ATAAACTTGA TCAGGTATTA
ATTGCCTCGT GCTATGACGA ACATGTGCGC CAAGTGCCAG CCAGCTTAAT CAACGCCTTG
GTTGCGCAAT GGCAGCCGCA GGCGATTTAT GCTAAATATC GCCCTCGGGC TGCTGCCAAA
GTTGACGAGG CCGCGATGGC TGAGTTAGCT CCAACTAGGC CAGTGTGGGG TGAGCCAATC
GAGCAAGTGG TGGTGCAAGA AGCTGGGTTA AGCTATGAAT TGCGGCCTAA CGACGGCTTG
AGCATTGGTT TATATGCTGA TATGCGTGAA ACTCGCCAAC GGGTGCGCAA TTTGCTTGCC
AAGCGTCAAT TGCGGGTGCT CAACACCTTT GCCTATACCT GTGGCTTTGG GGTGGCAGCC
GTTGCCGATG CCCCTGAGGC AATCGTGACC AATCTTGATC TTTCGCGGCG CTCGTTGGAT
TGGGGCAAAA TTAATTATGG CCTGAATCAG TTGGCCGTTG AAGATCGTCA GTTTGTATTT
GGCGATGTCT TCGATTGGCT CAGTCGTTGG GTGCGTCAAG GCCGTCAATT CGATGTGGTG
ATTCTTGATC CACCGTCGTT TGCCCGCAAT CGGGGTAAGC GTTGGCGAGC CGAAGAAGAT
TACGCCGATT TGGTAGCCTT GGCGGTGCAG TTGTTGCCAG CCGATGGCCA TTTAATCGCT
TGCTGTAACC ATGTTGGGCT TTCGCGGCGG CAATTTCGTG GTCAAGTCGA ACGCGGTATG
CAGCAAGGGC GTTGGCATGG CACGATTGAA GCCAATTATC CGGCCTCGCC CTTAGATTAC
CCCGCTGCCT ATGGCGAAAG CCACTTGAAA ATTATTTTAG CGACTGGTCA AACCAACGAT
TAA
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| Protein sequence | MHIEILYRDE QILVINKPTG VATHAPQGDL ALTDVERALR AQLQLEYLAI HQRLDRDTSG
VMLFALDPAA NANLATAFAE HTIEKTYQAL VYGVPIQTQG VIDAALAPAG DGMIQVASAH
DRRAQSAITH YRVLVSSPDQ RFSLLELQPK TGRTHQLRVH CECLGHPIVG DPLYDVARAA
PRLMLHASEL RFTHPLTQQP LHIQAPTPAL FTRVAQGLPE LQQSTELAAL NGLIELAAER
RAVLAADPAT TIFRVFHGPS DGLTHPWLQH WTVDKLDQVL IASCYDEHVR QVPASLINAL
VAQWQPQAIY AKYRPRAAAK VDEAAMAELA PTRPVWGEPI EQVVVQEAGL SYELRPNDGL
SIGLYADMRE TRQRVRNLLA KRQLRVLNTF AYTCGFGVAA VADAPEAIVT NLDLSRRSLD
WGKINYGLNQ LAVEDRQFVF GDVFDWLSRW VRQGRQFDVV ILDPPSFARN RGKRWRAEED
YADLVALAVQ LLPADGHLIA CCNHVGLSRR QFRGQVERGM QQGRWHGTIE ANYPASPLDY
PAAYGESHLK IILATGQTND
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