Gene Haur_3162 details

Gene Information

• Locus tag: Haur_3162
• ID: 5735034
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Herpetosiphon aurantiacus ATCC 23779
• Kingdom: Bacteria
• Replicon accession: NC_009972
• Strand: +
• Start bp: 3991393
• End bp: 3993309
• Gene Length: 1917 bp
• Protein Length: 638 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 641280305
• Product: putative PAS/PAC sensor protein
• Protein accession: YP_001545927
• Protein GI: 159899680
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG1366] Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor)
• TIGRFAM ID: [TIGR00229] PAS domain S-box; [TIGR00377] anti-anti-sigma factor

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.13851
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGTGCAT TCTTTACTCC AGCCACATGG CTGATGAAAC GCCTAACCTA TCCCCAAAAA 
TTTGGGTTAT TGAGCTTGGT TTTCGCCATT CCATTAACCT TTTTGCTGAG TGCCCAATTA 
ACTGAAATTC AACGCCAAAT TAATTTCACG CGGAGCGAAC TAACTGGCAC AACCTACCTG 
CAACCGCTAC GTGAAATTTT GCAAGATATT ATCGAGCAAC AATTAATCGC CGAGCAATAT 
CTTGGTGGCG ATCAAGCATT TTTAACCCCA CTTTTGCTTA AAAACGAAGA GCTTGCCCAA 
CATCTTGAGA CATTTAAAGC CTTCGATTTA CAATATCAGG ATCGTTACGA TACCCAAACG 
CAAGTCACAA TTCTTTTTAA TGAATGGGAG CGGCTGCAAG CTCAATTAAC CTTACGCAGT 
GTTCCCGATA GTAATGCCGC CCACGATCGG CTAATTCAGG CGGTTCGCGC ATGTATGCAG 
CGTATCGGTG ATCAATCAGG CTTAATTCTC GACCCAAACA TTGATAGCTA TTATTTAATG 
AATGCCTTGA TTGAAACCTT GCCAGCCCAT CAAGCTGCTA CTGCGCGGGT TGCTGGCGCT 
GGTGGTAATG CAATCACTCG TGGCACGGTC AGCAGCGAAG AAAAAAACAC GCTGACGGTC 
GTCAATAGCC AACTCCAAGA AACCAATACC AAAATTAACT ATAGCTTAGG CGTAGTATTT 
AGCAATAATG AAAGCTTACG TCCATTACTA GAAAGTGCAG TCCGCACCTT TATTCAGGCG 
ACTGAAGAAT TAAGCTTCCA AATTATTTTG CAAGTGATTC GCGTTGAAAC TCCAACGATT 
GATCCAAGCA TTTTTCGCCA AGAAACTGAG CGCACCCTCA ATGCAAGCTT TAGCCTATGG 
GATCAAACAT CAATTCAGCT TGATAATGTG CTCAACCAGC GTATTGGCCA AGCTCAAAAT 
CGTCGAATCT TTTTCATCAG CCTGATTACG ATTCTTGTCT TAGTGGCAGT ATATCTCTTC 
CTTGGCTTCT ATCGCGCAGT AATGGATACA GTTCGCGCTT TTCAACAGGC AGCTGGCAGT 
ATGCTAAGCT CAAATACCTT GAGCAATGTA GCAATTGATA CCCGCGATGA ATTAGGCCAA 
GTTGCAACGT CGTTTAACTC AATCGCCAGC GCCATGGTCG AATCGAGCAG CCAACGCCAA 
GCCATCGTTG ATCACGCTGC CGAAGCAATT ATTACCTACG ATCAACAAGG CATTATTCGC 
TCAGCCAATC GCGCTGCCGA ACGCATTTTG GGCCGCAACG TCGATCAACT AAATATTGCC 
GAAGTGCTGG GAGTCGAATT AGCCAACATC CAACAACAAA CCACGACCTA TGAGTTTGAT 
GTACGCTTAC CAACCAATGA GATTCAACCG GTTGAAATGG TGTTGGGCAC AATGCAGCTC 
GGCGAGCAGC AACTCTGGAT CGCCTTCCTG CGTGATATTC GCATCCGCCG CCGCACAGAG 
CAAGAACGCA ATCGGCTGCA AGATGAGATT ATTCGTGGCC ATGCCGCCGT GCTCGCTCGC 
CTGAGTGCTC CATTAATTCC GCTCAGCGAT AATGTGGTAG TCATGCCGTT GGTCGGGGCG 
CTTGATGGTG AACGTTTACA GCAAATTACC AATAATTTGC TCGAAGGATT GTCGAACCAA 
CGGGCGCGGG TGGCCTTGCT CGATATGACG GGCGTACCAA ATGTTGATCG TGAAGTTGCC 
AGCCGTTTGT TACGTGCCGC CCAAGGCATT CGCTTACTTG GCGCAGACCT CATTTTGACC 
GGAATTCAGC CCGATGTGGC CCAAGCATTA ATCAGCGTGG GCGGCGATCT CAGCGACCTC 
CAGACCTACC CCACCTTGCA ACAAGGTATT CGGATGGTGC TGCGCAACCT AGCGTAA 

 

Protein sequence

MRAFFTPATW LMKRLTYPQK FGLLSLVFAI PLTFLLSAQL TEIQRQINFT RSELTGTTYL 
QPLREILQDI IEQQLIAEQY LGGDQAFLTP LLLKNEELAQ HLETFKAFDL QYQDRYDTQT 
QVTILFNEWE RLQAQLTLRS VPDSNAAHDR LIQAVRACMQ RIGDQSGLIL DPNIDSYYLM 
NALIETLPAH QAATARVAGA GGNAITRGTV SSEEKNTLTV VNSQLQETNT KINYSLGVVF 
SNNESLRPLL ESAVRTFIQA TEELSFQIIL QVIRVETPTI DPSIFRQETE RTLNASFSLW 
DQTSIQLDNV LNQRIGQAQN RRIFFISLIT ILVLVAVYLF LGFYRAVMDT VRAFQQAAGS 
MLSSNTLSNV AIDTRDELGQ VATSFNSIAS AMVESSSQRQ AIVDHAAEAI ITYDQQGIIR 
SANRAAERIL GRNVDQLNIA EVLGVELANI QQQTTTYEFD VRLPTNEIQP VEMVLGTMQL 
GEQQLWIAFL RDIRIRRRTE QERNRLQDEI IRGHAAVLAR LSAPLIPLSD NVVVMPLVGA 
LDGERLQQIT NNLLEGLSNQ RARVALLDMT GVPNVDREVA SRLLRAAQGI RLLGADLILT 
GIQPDVAQAL ISVGGDLSDL QTYPTLQQGI RMVLRNLA