| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_3104 |
|---|
| Symbol | |
|---|
| ID | 5734976 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009972 |
|---|
| Strand | - |
|---|
| Start bp | 3915941 |
|---|
| End bp | 3917557 |
|---|
| Gene Length | 1617 bp |
|---|
| Protein Length | 538 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 641280248 |
|---|
| Product | protein-export membrane protein SecD |
|---|
| Protein accession | YP_001545870 |
|---|
| Protein GI | 159899623 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0342] Preprotein translocase subunit SecD |
|---|
| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000111638 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCTGTT GCGATGGGAG TTTCTTTAGG TATCTCTGGG TGGGCTGTAT TCCTCGCCAC
GCCCATCCTT CACCAAACAC GGAGGCAGCG TTCGTCGTGC GTAAGCAAGT AATTAGTGCC
CTCGTCGTGA CGATTGTGGC AGTTGCTTTA GCGACTTGGA TTGTATTCTT TCCTAAGTCG
TTCCAAAGCC TGACTGGTCG CGATGTTTCA ACCCACTTAG GTCTCGACCT ACAAGGCGGC
TCGCAAATCT TTTTACGTCC CGCCGATCCC AACGAAGCCG ATTTGGCCGC CAAACTCGAA
AATGCCGCTG GTGTGATCGA GCGTCGTGTC AATGGCTTGG GCGTAAGCGA ATCGGTTGTC
CAAGTTGTCA ACAGCGATAG TATTGTGGTC GAATTGCCAG GGGTCAAAGA TCCTGCGGCA
GCTTCGGAAG CGCTCAAAGG CGCTGGTAAC CTCGAATTTA TTGATCCTCA AGGTCAGTAT
TTGCCCGATG GCACCGAAGT TTGTACCACC GCTACGCCAC GTTACCCAAT CACGGTGCAG
TTGCCAAGCA GCGTCACTGG CACAACTGGC GTAACCACCA CCGACAGCTT GAGTAACACC
AACCCGTTGT CGTCAACCAA TAATTTGACC ACAACCACTC CAACCACTAC TACTGAGCGG
CCTTGTGAAT CGCCATATAC CACAATTGCT CGTGGTAGCG ATCTCGACAC CAGCCAAGTT
GCCTTGACAA CTGATCAAGC TGGCCGTCCA GCAGTGTTCT TCCGCTTCCA AACCAACTCA
GATTCGGCCA CCCAAATCGC TAGCTTTACC AGCCAAAACA TTGGCCGGCC TATGTCGATT
GTGGTTGATA ACCGCGTGAT TTCAAGCCCT CAAATTAATG GCTCTTTGCC TGGCGAAGGG
ATCATTACGA TGGGTTCGAC TGGCACGACG GTTGCTGAGC AAAATTCACA AGCGCAAGCA
CTGCAAAACC AGCTCAAATA TGGCGCTTTG CCAGTAACCT TGATCGAAGA TAGTAACCGC
AGCATCAGCG CAACCCTTGG CAACGACTCA ATTGACGCAA GCAAAATTGC TGGCGCAATT
GGCTTGATTG CGGTTATGCT GTTTATGTTG ATGTACTATC GCTTGCCTGG CTTGTTAGCC
GACATTGCCT TAATCGTTTA TACCATCCTC TCATTTGCGA TTTACAACTT GGTTCCGGTC
ACATTGACCT TGCCAGGGAT CGCAGGCTTT ATTTTGTCGA TTGGTTTGGC CGTTGACGCG
AACGTGTTGA TTTTCGCGCG GATCAAAGAA GAATTGCACC GTGGCCGCTC ATTGGAACGG
GCAGTCGAAG ATGGCTTCAA CCATGCATGG CCATCAATCC GCGACTCCAA CGCTTCAACC
TTGATTACAA GCTTTATCTT GTATGTCTTG GGTAATGGGC TTGGCGTAAG TATCATCCAA
GGCTTTGCAT TGACTTTGGC CTTGGGGATT ATCGTCAGCT TGTTTACCGC AATCACCGTT
TCGCGCATGT TGTTGCGCTT GACGATTGAT CTTGGGGTTT CGAATCCACG TTGGTTTGGG
GTTAACCCCG AAGAAGATGC TGCTGAAGTG GCAGCCTTAT CGTCAGAGCA AGCTTAA
|
|---|
| Protein sequence | MRCCDGSFFR YLWVGCIPRH AHPSPNTEAA FVVRKQVISA LVVTIVAVAL ATWIVFFPKS
FQSLTGRDVS THLGLDLQGG SQIFLRPADP NEADLAAKLE NAAGVIERRV NGLGVSESVV
QVVNSDSIVV ELPGVKDPAA ASEALKGAGN LEFIDPQGQY LPDGTEVCTT ATPRYPITVQ
LPSSVTGTTG VTTTDSLSNT NPLSSTNNLT TTTPTTTTER PCESPYTTIA RGSDLDTSQV
ALTTDQAGRP AVFFRFQTNS DSATQIASFT SQNIGRPMSI VVDNRVISSP QINGSLPGEG
IITMGSTGTT VAEQNSQAQA LQNQLKYGAL PVTLIEDSNR SISATLGNDS IDASKIAGAI
GLIAVMLFML MYYRLPGLLA DIALIVYTIL SFAIYNLVPV TLTLPGIAGF ILSIGLAVDA
NVLIFARIKE ELHRGRSLER AVEDGFNHAW PSIRDSNAST LITSFILYVL GNGLGVSIIQ
GFALTLALGI IVSLFTAITV SRMLLRLTID LGVSNPRWFG VNPEEDAAEV AALSSEQA
|
|---|
| |