| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_2857 |
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| Symbol | |
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| ID | 5734728 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009972 |
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| Strand | + |
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| Start bp | 3627696 |
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| End bp | 3630149 |
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| Gene Length | 2454 bp |
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| Protein Length | 817 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 641280000 |
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| Product | spermidine synthase |
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| Protein accession | YP_001545623 |
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| Protein GI | 159899376 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4262] Predicted spermidine synthase with an N-terminal membrane domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00246642 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCATTG TCCTTGATCA GCGCTCCGAT CAATCACTTG CCGTCTACAT CGACGGCGAT
TTGCAGTTTG ATAGCCGTGA TGAAGGGGTG TACCACGAGC TTTTGGCCTT GCCAGCGCTC
GCGCTTGCCC AAGCACGCCG CCCCAAACGC CAACTCCGAG CGTTGATTTG CGGCGGTGGC
GATGGCTTCG TTGCCCGTGA ATTGCTCAAA TCCTCAGCCA TCAAGCAGAT CGATTTGGTC
GATTATGACC CAACCATCCT CGATTTGGCC CAAAACGAAT GGCCTGAACT CAATCAGCAT
GCCTTAACCA ACCCACGCCT AAAATTGCAT ATCTGCGATG CTGTGCAATT TGTCGATCTG
GCGGCGCAGG CAGCCGATGA ATACGATTTG ATTATTTGTG ATTTTACAGT GCCACGTGAT
CAAGCTGGCG CTCGTTTACA CAGCATCGAC TGGTATCAGC AATTGGCCTA TATTTTGCAT
CCCCAAGGCT TGATTGCGGT CAATGCTGCT TCGCCATCGC AAACGCCAGT CGCTTATTGG
ATGATGTATA ACAGCATTCG CACTGCCGAT TTGAACCCAA AGCCTTATCG TTTTGCCTTG
CCTTCGTTTA CCGAAGCAGG CTACGGCGAT GATTGGGGCT TTTTCATTGG TAGTCGTCGC
GCGTTACGCC CACGTGAGTT TGATCATTTG GCCTTGGCTG AGCCACGCGA ATTTTTGCAC
GATATCGAGC AACTGAAACG CGCCTTTGCC TTTCCCGCCG CGCTTGCCGA AAAACGCACC
ACCGCCCAAC CAACCAAACT AGCGAGCGAT GCGCTGTTGC ACAGTTTATT CGCGCCAACC
TGGGATGAAG CCAGCGGCAC CGATTGGACA TCACTCGATT TTGTGCATGA TCCAGCGCCG
TTGCCCAAAC CGCATACTAG CCCAACCCTA GTGCCAAGTG CTGTCCAGCA GGCATTGCAA
GCCGATCAAG GGCTTGATGA AAGCCAAGTT TTCGAGCAAG TGGTGCAAGT GATGCCCGCT
TTACGAGCCG AACAAACCCG CAGCATGGTA CGTGAATTTA TCGCCAACCC CTTGCGATTT
CTCAATTCGC TGGATTTGCG CAGCTTGGTT GAGGCCTTGT TGCGGCGTAG TCGCGAATTA
CCACGCAAAC TTGTGACCGA ATTACGCTTG CTGCGTCGCC ATCTGCAACG CACGTGGGAG
AATCCCCAAT TGTTGCTCAG CCGTGGCCTA CGAATCGTCT CGGTAATTGC CTTGGTGATT
ATTTTGGCCA ACTTGCTACA CCCCGACACA ACCTATGCCA AAGGCGATAC CTCACCAGGC
TCTGGCGCAA CGTCAAGTCA ATCGATGGTG CGTACCAATT CGCCCTATGA TGTGGTGCAA
GCGCCGCCTT CCACGGTGGC TGGGCGCGGT TTCGCAAGCT CGACCTACGG GCGCGGACCG
GTCGATGAAT ATGGAACCTA TATTCCAACC ACTCGGCGCT ATCGCTACTA TGGCTCATAT
TATGGCGGTA GCTCCTATCG CAACTATAAC CGTAACCAAC GCCCAAGCGA AGATCCTAAC
GAGGGCGGTG CACTCTATCG GCTGACTCCC GAAACTGATA TTTTGGCCAA TGGCGAAATC
GTCATTATCT TGACCGATCA AGCCTATTTG TTGCTTGCTG ACCAAGTAAT GACCGTGGTT
GATGCCGAAG ATGGCTTGCC GATTGTCTTT TTGCAGCGCG ACGAAGCCTT GATTTGGCGT
ACTCATCGTG AGCTTGACCG CCAACGACGC GGGCTTGATG GCAGTGTCAA AGCGAAACAA
GATTGGATCG ATTGGGTCAG TTGGGCCGGC TTTGTGCCTT GGCGCAACGA TGATCAAGCC
GAATTGAACA ACATTGTGCA AACGCGGGGC ACACTCGATC AAGCAATCAA AAGCTTAGGT
TCGATTCCGG CCAATCAGCC CGCCATTCGG GTTGCGCCAA CTGCTGGGGG ATTTCAATTA
TTCTCCAGTG TCTGGATGAA TGCTGAAGGC AGTTTGGCGA TTCTCGAACA GCCAGATGGT
AGCAAGGCCT ATCTCAATAA AACTGGCTGG TTCCGTGATG CGGCACTAAC CCAACCGCTT
AGCGAGCCAT ACCCTGATGA GTTTCGCACG AAAGTTCTAG TGCCATTCTT GACCAAGCAG
ACCACGGAGT ATGAGGCAAT CAAAAAGCGC ATCGAGGCTG ATTTGACCAG TGCTAAGAGC
GACTTAAGTT TGTTGAATTC AGACAAAACC GAGTACACGT CAATTCAAAC GAGCTATGGC
CCAAGCGATA TTGTTGATTA TGGCACGACC GAAATCCGCG TAGATGAAGC CTTGCGCCGT
ACCAACGACG ATATTGCCCG AACCCAACAG CTCATCCAAA TCTTGAATGA TCAACTAAGT
TCGTTGCCCA AGCAAAACGA CGCGGCCAAG AAGTTTTTAC AGAGCTTGAA ATAA
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| Protein sequence | MTIVLDQRSD QSLAVYIDGD LQFDSRDEGV YHELLALPAL ALAQARRPKR QLRALICGGG
DGFVARELLK SSAIKQIDLV DYDPTILDLA QNEWPELNQH ALTNPRLKLH ICDAVQFVDL
AAQAADEYDL IICDFTVPRD QAGARLHSID WYQQLAYILH PQGLIAVNAA SPSQTPVAYW
MMYNSIRTAD LNPKPYRFAL PSFTEAGYGD DWGFFIGSRR ALRPREFDHL ALAEPREFLH
DIEQLKRAFA FPAALAEKRT TAQPTKLASD ALLHSLFAPT WDEASGTDWT SLDFVHDPAP
LPKPHTSPTL VPSAVQQALQ ADQGLDESQV FEQVVQVMPA LRAEQTRSMV REFIANPLRF
LNSLDLRSLV EALLRRSREL PRKLVTELRL LRRHLQRTWE NPQLLLSRGL RIVSVIALVI
ILANLLHPDT TYAKGDTSPG SGATSSQSMV RTNSPYDVVQ APPSTVAGRG FASSTYGRGP
VDEYGTYIPT TRRYRYYGSY YGGSSYRNYN RNQRPSEDPN EGGALYRLTP ETDILANGEI
VIILTDQAYL LLADQVMTVV DAEDGLPIVF LQRDEALIWR THRELDRQRR GLDGSVKAKQ
DWIDWVSWAG FVPWRNDDQA ELNNIVQTRG TLDQAIKSLG SIPANQPAIR VAPTAGGFQL
FSSVWMNAEG SLAILEQPDG SKAYLNKTGW FRDAALTQPL SEPYPDEFRT KVLVPFLTKQ
TTEYEAIKKR IEADLTSAKS DLSLLNSDKT EYTSIQTSYG PSDIVDYGTT EIRVDEALRR
TNDDIARTQQ LIQILNDQLS SLPKQNDAAK KFLQSLK
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