| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_2665 |
|---|
| Symbol | |
|---|
| ID | 5734560 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009972 |
|---|
| Strand | - |
|---|
| Start bp | 3419299 |
|---|
| End bp | 3421359 |
|---|
| Gene Length | 2061 bp |
|---|
| Protein Length | 686 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 641279807 |
|---|
| Product | VanW family protein |
|---|
| Protein accession | YP_001545431 |
|---|
| Protein GI | 159899184 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG2720] Uncharacterized vancomycin resistance protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000623276 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGATG AATTTTATCA GAAATATGGC CCAATCGAGC GTCGTCGCCA AAATGGCGAT
GTGCAACAGT TTGATGCAAC TGCTCCCTTG GCCGACGATC TCCCCGTTCG ATCCGCTGCG
CCGCCAAAGC GTAAACGCAG TCGCCTACGT ACTTTTATGT GGGGCGCTGG CATTACGCTA
GGCTTGGTTG GCTTGTTGTT TGGCATCGGT TTGTGGTATC TCAATCGGAC CTTTGAAGGC
CGAATTTACC CAAATGTGGC GATTCAGGGC ATCGATATGA GCCAGAAAAC CCCTGAAGAA
GCTAAGGCGT TGCTTGCCGA ACAATATGCC GATTTGCTCA AGCGCCCAGT TGGTCTAAGT
TTCAATGGCC AAACTTGGGA GCCAACCGCC GATCAAGCAG GCATCAGCCT TTCAATTGAG
CAATCGGTTG ATGAAGCCTA TAGTCTTGGG CGCGGTGGCA ACATCATCAA TACCCTGCAG
GCGGTTTCGG GCATTTGGCA AAATGGCTAT GATATTCCGT TGGCGGTAAC CGTTGATCAA
GCTCAACTGA GTGAGTATCT GACGACCGCA ACCAACGATT TGATCACCGC GCCAGTCAAT
GCCAATCTGA TCGTTGCTGG CAATACTGCC ACAATGACTC CGGCTCGCGA AGGTCGGTTG
ATTCTGATCG ATGAAACTGC CCAAGATATT TTGACCCAAT TGCAAACACT CTCACCTGCT
CAAGTTGTCT TGCGCACCGA AATGGTGATG CCAACCGTGC TTGATGATGG AGTGTTTGAA
GCTAAACAAA CGATTGATGC AGTGTTGCAA TCGCCATTAA CCTTGATTGC TGGCGATTTG
CAGTGGGAAC TCAGCACCGA TGATCTGCGT GCTTTGATTC GGCTTGACAC CCACACTGAT
GCCAATGGCA AAACGAAAAT GGTGGCTTCG TTGAACGATC AAATGATTCG CCAACGGGTT
GCAACCTTTG CCGATGAAAT TGGGCGTGGC TCAGTCAACC CGCGCGTAGC TTGGGATGGT
GGGGCACTCA CGATTGTGCG CGAAGGCCGC ACCGGTTTAC GCCTCGATGA AGAAGCCTCG
GCCCGCCGCA TTATCGAGCA AGCCACGATT GGCGAAACCC GCACGATCGA ATTGGTTATT
CGTGAAGTGC AGCCCGATGT AACCGCCGAA AATATCCATA GCCTGGGAAT TGTTGAAGCA
GTTGGGGTTG GCAAAAGCTC CTACAAAGGC TCAGCATCCT ATCGTGTGAC CAACATCAAA
GCTGGCTCAC GCTTGCTTGA TGGAATTTTG ATCAAGCCAG GCGAGGAGTT TTCGTTCAAC
AATGCGGTTG GCTCAATCGA CGAAGCCAAT GGCTTTGTCA AGGGCTATGC AATTGTTGGC
AATCGCACCC AAGAAGAATG GGGTGGCGGG ATTTGCCAAG ATTCAACCAC GCTGTTTCGA
GCGGCGTTCC ACGCTGGCTT GCCGATCACT GAGCGTCATA CCCACTCGTT CCGCATTTCG
TGGTACGAAG TCTATGAACC CTATGGCATG GATGCAGCAA TTTTCACCGG AGCCTTGGAT
TTCCGCTTTG TCAACGATAC GGGCAAGTGG CTGTTGCTCA ATACCTATGT TGATGATTCG
ACGGCAACTG TAACCTATGC CTTGTATGGT ACGGCTCCCC AGCGCGAAGT GATTCTCGAT
GGGCCTTATG TGACCAAAGA GTATCCTAAG CCAACCGAGC CAACCTATAT CGCTGATCCC
AAAGAGCCAG TTGGGGTGTT TCATCAAACC GACACCGCCC GCGATGGCAT GGATATCATC
GTTTATCGCA TTATCCGCCA AGATGGCCAA GTGATTTTGC GCGAGCCATT CAACACCCAT
TTCAAGCCAT GGCCTGATAT TTATGTGCAT AATCCGGCAA CTCCGTTGCC ACCAAAGGGT
TGTAAACCAA CCGATCCATG TGCTAATCCG GCAACGCCAA CGCCAGAACC ACAGCCGCCG
CAACAGCCGG AGCCAACGCC TGAGCCACAA CCAGAGCCAA CGCCAGGTGG CGAGATTGTA
GTACCAACGC CAAATCCCTA A
|
|---|
| Protein sequence | MADEFYQKYG PIERRRQNGD VQQFDATAPL ADDLPVRSAA PPKRKRSRLR TFMWGAGITL
GLVGLLFGIG LWYLNRTFEG RIYPNVAIQG IDMSQKTPEE AKALLAEQYA DLLKRPVGLS
FNGQTWEPTA DQAGISLSIE QSVDEAYSLG RGGNIINTLQ AVSGIWQNGY DIPLAVTVDQ
AQLSEYLTTA TNDLITAPVN ANLIVAGNTA TMTPAREGRL ILIDETAQDI LTQLQTLSPA
QVVLRTEMVM PTVLDDGVFE AKQTIDAVLQ SPLTLIAGDL QWELSTDDLR ALIRLDTHTD
ANGKTKMVAS LNDQMIRQRV ATFADEIGRG SVNPRVAWDG GALTIVREGR TGLRLDEEAS
ARRIIEQATI GETRTIELVI REVQPDVTAE NIHSLGIVEA VGVGKSSYKG SASYRVTNIK
AGSRLLDGIL IKPGEEFSFN NAVGSIDEAN GFVKGYAIVG NRTQEEWGGG ICQDSTTLFR
AAFHAGLPIT ERHTHSFRIS WYEVYEPYGM DAAIFTGALD FRFVNDTGKW LLLNTYVDDS
TATVTYALYG TAPQREVILD GPYVTKEYPK PTEPTYIADP KEPVGVFHQT DTARDGMDII
VYRIIRQDGQ VILREPFNTH FKPWPDIYVH NPATPLPPKG CKPTDPCANP ATPTPEPQPP
QQPEPTPEPQ PEPTPGGEIV VPTPNP
|
|---|
| |