| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_2548 |
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| Symbol | |
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| ID | 5734426 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009972 |
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| Strand | - |
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| Start bp | 3274623 |
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| End bp | 3275783 |
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| Gene Length | 1161 bp |
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| Protein Length | 386 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 641279688 |
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| Product | RpoD family RNA polymerase sigma factor |
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| Protein accession | YP_001545314 |
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| Protein GI | 159899067 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00000188671 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTGACA AGCTACTGGA GCTTGCGGCA AAAAATCAAA ACCGCATCAA ACGCGAAGAC
ATTCTCAGCG TGTTGCCAGA GCCAGAAACG AATATCGAAG CCCTCGAAAG CCTCTACGAA
CAAATCGAAG AAGCGGGGAT CGAGGTTGTT GATGCAGATG AAGCGCCCAA CGTTGCCGAC
CTCGATCTCG ATTTAGATCT TGATAGTGAT CACGACCTCG ACGGAGCCTT GCCTGATCTT
TCGGATATTG CGCTCGACGA CCCAGTGCGC ATGTACTTGC AAGAAATTGG TCAAGTACCC
TTGCTGACTG CGGCGGAAGA AGTCGATCTG GCCAAGAAGA TGGAAGTGGC TCACGCCGCC
AACGATACCT TGCTGCAAGA TGATGGCATG CTTGAACATA GTGATCGAAT TTCGTTAAAA
CGCCATATCG ATACTGGCCG AGCAGCCCGC CAACATTTGA TTCAGGCTAA CTTGCGCTTG
GTGGTTTCGA TTGCCAAAAA ATATACCTCG TATGGCTTGA CCATGATGGA TCTGGTGCAA
GAGGGCAATA TTGGCTTGAT GCGGGCAGTC GAGAAATTCG ATTACACCAA AGGCCATAAG
TTCTCGACCT ACGCGACGTG GTGGATTCGC CAAGCAATTA CGCGAGCGAT CGCCGACCAA
AGCCGCACCA TCCGCTTGCC TGTGCACATG GGCGAGGCAA TTAGCCAAGT TAAGCGAACG
TCGCATAAGT TGCAACAAAC CATGCAGCGC GAACCAACGC CCGAAGAAAT AGCCGAAGCC
ATGGGCATTA CCGCCTCGAA AGTGCGTCGC ACCTTGGAAG CCTCGATGCA CCCACTTTCG
TTGGAAATGC CGGTTGGTCA AGAAGGCGAA GGCCGCATGG GCGATTTCAT CGAGGATGAT
CGAGTTTCAA CCCCAGTTGA TGCTGCGGCC ATGACCATGT TGCGCGAACA AATTGAAGAA
GTTTTGCAAA AATTGCCTGA GCGCGAACGC AAAATAATTC AATTGCGCTA TGGCCTTAAA
GATGGCCGCT ACCGTACCCT CGAAGAAGTT GGCCTTGAAT TTGGCATTAC TCGCGAACGG
ATTCGCCAAA TCGAAGCGGT GGCCTTGCGT AAACTGCGTC ACCCCCACCT TGGCAAGAAA
TTACGTGGCT ATCTTGATTA A
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| Protein sequence | MIDKLLELAA KNQNRIKRED ILSVLPEPET NIEALESLYE QIEEAGIEVV DADEAPNVAD
LDLDLDLDSD HDLDGALPDL SDIALDDPVR MYLQEIGQVP LLTAAEEVDL AKKMEVAHAA
NDTLLQDDGM LEHSDRISLK RHIDTGRAAR QHLIQANLRL VVSIAKKYTS YGLTMMDLVQ
EGNIGLMRAV EKFDYTKGHK FSTYATWWIR QAITRAIADQ SRTIRLPVHM GEAISQVKRT
SHKLQQTMQR EPTPEEIAEA MGITASKVRR TLEASMHPLS LEMPVGQEGE GRMGDFIEDD
RVSTPVDAAA MTMLREQIEE VLQKLPERER KIIQLRYGLK DGRYRTLEEV GLEFGITRER
IRQIEAVALR KLRHPHLGKK LRGYLD
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