Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Haur_0985 |
Symbol | |
ID | 5732888 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Herpetosiphon aurantiacus ATCC 23779 |
Kingdom | Bacteria |
Replicon accession | NC_009972 |
Strand | - |
Start bp | 1128387 |
End bp | 1130501 |
Gene Length | 2115 bp |
Protein Length | 704 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641278119 |
Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_001543761 |
Protein GI | 159897514 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000494124 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTAAAG CAAGCATTGT CATTGTTGAA GATGAAGTAA TTGTGGCCTT GGATATGGCG CAAGCACTCA AGGCGGCGGG CTATAACGTG ATTGGCAGTT TTAGTTGCGG TGAGGCCGCG CTCGAATTTA TTGCCGAACA ATGCCCCGAT TTGATCGTGA TGGACATTCA CTTGCAAGGC CAACTTGATG GCATCAGCAC TGCCGAACAG ATTCAAAAAC GTTATGGCTT GCCGATTATT TATCTTACCG CCTACTCTGA CTCGGAAACC TTGAGTCGCG CCAAGGCAAC CGAACCGTAT GCCTACTTGG TCAAACCATT TGAAGATCGT GATTTGCTGA GTGCCATCGA AATGGGTTTG TATCGCCATC GCGTGGATCA GCGCTTGCGG CGCATGGAAC GTTTATATTC AAGCACCTTA AACAGCGTTG ATGATGCAAT TATTACAACA GATATCTATG GCTTGATTAA ATTTGCCAAT CCGACCGCCA GTAGCTTGTT AAATCGACCG AATGATGCAT TAATTGGCCA ATTTATAGGC GATGTAGTTC AGCTCCTTGA TCGCGAAACC AAAATAACCT ATCAATTTGA TTTGCCCTAT TTAATCCAAC AAGCTAATCA TCATATGTTA TTACCACGCC AGATTCTGGT GAACGATCAA GCTAAATTTG TGGTTGCGCC AAGTATTTCG CAAATTCGCG AAGAAGATGA AGCGATTGCT GGAATTGTCT TAGTGCTGCG TGATATGCGC GATCTTGATG CAGCTGAGGA GCATATTCGC CATCAAGCCT TGCACGATGC CCTAACTGGC TTGGCCAATC GGAATGTTTT TATCAATCGT TTGCAATATA TTCTTGATCA TTATCATTTA CACCATCATC ATGCCGTACT ATTTATCGAT CTTGATCGAT TCAAGATTAT CAATGATAGT TTAGGCCATA TTGTTGGCGA CAAATTATTA ATTCAAGTTG GTCAACGCTT AGAGCGTTGT ATTCGCTCCC ATGATTTAGT AGCACGGCTG GGCGGCGATG AATTTACCAT TTTGCTTGAT GGCGTTAATG ATATCCATGA TGTTCTACGA GTTACCGATC GTTTATTAAG TGTGGTTGCC GAGCCATATC ATATTGATGG CTATAAAGTG TTTACCGCAG CCAGCATTGG AATTGTGGTG ATTGACGATC ATTACAAGCA TTATCACGAA GTGTTGCGCG ATGTGGATAG CGCGATGTAT CGGGCTAAAT CGCAAGGTCG TGGTTGTCGC GCCGTCTTTG ACGAAGAGAT GCATGTTGAG GCCTTGCGTA CATTGCAACT TGAGGTCGAA TTACGCCGCG CAGTTGAGCG TGACGAATTG TGCTTGCACT ATCAGCCAAT TATCAAACTA GCCACGGGCG AGTTATCGGG CTTTGAGGCG TTGTTGCGTT GGAATCACCC AACTCAAGGC GTGATTGGCC CAGCCTCGTT TTTTGCCATT GCCGAAGAAA CTGGGATTTT AGCCCAAATT GGCTGGAAGT TGTTACGCGA ATCGTGCCAA CAAATTTGTG CTTGGCAAAA CGAATTTCAG TTTCATCCAC CCTTGGAATT GAGCGTTAAT TTTACCCATC GCCAATTTTT CCAAGCCAAT CTGATTCAGC AAGTTCAAAG CATTTTAGCT GAAACTGGCA TGCCTGCACG GCATTTGTGC GCCGAAATTA CAGAAGGCGT GATGATGCAA AGTAATCGTG CGGTCGAAGT GATGCACGAA TTGCATGATT TGGGCGTGCA AGTGCATATC GATGATTTTG GCACTGGTTA TGCCTCGCTC AGTTTGTTGC ATAGTGCCCC AATCGATGTT TTAAAGATTG ATCGGACGTT TATTCAGCCC GAAAGCGGAG CCAGCAAGCA CTCAATCGCC CAGTTAATTA GCTTGATGGC ACGATCGTTG GGTTGTGCCG TGGTCGCTGA GGGCGTGGAA GATGCCCAAA CTGCCCAGAT GTTGATCGAA ATGGGTTGCG ATTTTGGTCA AGGCTGGTGG TATTCCAAAG CATTACCACC AGAAGAGGCG CGGGTATTAA TTCGCAACTT TGCCCAAGGC ACAGTAATGG TCCCGGTTCC ACTGAATGCC AAAGTTGCTC ACTAG
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Protein sequence | MSKASIVIVE DEVIVALDMA QALKAAGYNV IGSFSCGEAA LEFIAEQCPD LIVMDIHLQG QLDGISTAEQ IQKRYGLPII YLTAYSDSET LSRAKATEPY AYLVKPFEDR DLLSAIEMGL YRHRVDQRLR RMERLYSSTL NSVDDAIITT DIYGLIKFAN PTASSLLNRP NDALIGQFIG DVVQLLDRET KITYQFDLPY LIQQANHHML LPRQILVNDQ AKFVVAPSIS QIREEDEAIA GIVLVLRDMR DLDAAEEHIR HQALHDALTG LANRNVFINR LQYILDHYHL HHHHAVLFID LDRFKIINDS LGHIVGDKLL IQVGQRLERC IRSHDLVARL GGDEFTILLD GVNDIHDVLR VTDRLLSVVA EPYHIDGYKV FTAASIGIVV IDDHYKHYHE VLRDVDSAMY RAKSQGRGCR AVFDEEMHVE ALRTLQLEVE LRRAVERDEL CLHYQPIIKL ATGELSGFEA LLRWNHPTQG VIGPASFFAI AEETGILAQI GWKLLRESCQ QICAWQNEFQ FHPPLELSVN FTHRQFFQAN LIQQVQSILA ETGMPARHLC AEITEGVMMQ SNRAVEVMHE LHDLGVQVHI DDFGTGYASL SLLHSAPIDV LKIDRTFIQP ESGASKHSIA QLISLMARSL GCAVVAEGVE DAQTAQMLIE MGCDFGQGWW YSKALPPEEA RVLIRNFAQG TVMVPVPLNA KVAH
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