Gene Dshi_4182 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_4182 
Symbol 
ID5714713 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009959 
Strand
Start bp29547 
End bp30521 
Gene Length975 bp 
Protein Length324 aa 
Translation table11 
GC content68% 
IMG OID641277077 
ProductMscS mechanosensitive ion channel 
Protein accessionYP_001542373 
Protein GI159046705 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0668] Small-conductance mechanosensitive channel 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.774704 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGGTTCCCC TCCCGGCCCG GGTCCGGGGC GCGGGAACCC TTGGGCGGCT CGCGCGTTGG 
GCGCGGATGG ACACCGTTGA AGAGATCTTT CCGCAGAACA TCACCGCACA TCTGGTGGCG
CAGCTCTCGG GCTGGGCCGA GGGGCTGATC GCCGCCCTGC CGCGCCTCAC GCTCGCGCTG
GCGGTAATCC TTGTCACCGC CCTCGTGGTC TGGGCTGTGC GGCGCCTGAT CCAGAGCCTC
GGCCGCCGGG CCGGTCTGCG CCGCAACCTG CGCGACGTGC TGGGGATGCT GGCCAATACG
GGTCTGTGGC TGGCCGGGCT GTTGCTGGCG CTCACCATCG TCTTTCCGTC GATCACCCCG
GGCCGCGCGC TCACCACGCT GGGCCTGGGC TCGGTCGCGA TCGGGTTCGC CTTCAAGGAC
ACGCTGGAGA ACTTCCTCGC CGGCATCCTC ATCCTGCTGC GCGAGCCCTT CACCATCGGG
GATCACGTGG ATTGCGAAGG CGCCGAAGGG CAGGTGGAAC AGATCACCAT CCGCGACACC
CATATCCGCC AGACCGACGG GCAGCTCGTG GTCGTGCCGA ACGCCATGCT GTTCCACAAC
CCGGTGACCG TGCGTACGGA TCAGGAGTTT CGCCGGGCGC GGATCGTCTG CGGCGTCGCT
TATGGCGAAG ACGTCGATGC CGCCCGCAAG GTGATCGAGG ACGCGGTGCG CGAGGTGGAC
ATGGTGCGCA ACGATGTGCG CGACATCCAG GTCTTTGCCA TGGCCTTCGG CGCGTCATCC
ATCGATTTCG AGATCACCTG GTGGACCGGC TCCGCCCCGG TGGATATCCG CGCCAGCCGG
GACCAGGTCG TGGCCGCGGT CAAGGGCGCG CTGGATGCCG CGGGCATCGA GATCCCCTTC
CCCTATCGCA CGCTGACCTT GCAGGGCGAC GCCCTGCCGG TGCAGGTGAT GAAGGGCCGG
AACGCCGCGG AATAG
 
Protein sequence
MVPLPARVRG AGTLGRLARW ARMDTVEEIF PQNITAHLVA QLSGWAEGLI AALPRLTLAL 
AVILVTALVV WAVRRLIQSL GRRAGLRRNL RDVLGMLANT GLWLAGLLLA LTIVFPSITP
GRALTTLGLG SVAIGFAFKD TLENFLAGIL ILLREPFTIG DHVDCEGAEG QVEQITIRDT
HIRQTDGQLV VVPNAMLFHN PVTVRTDQEF RRARIVCGVA YGEDVDAARK VIEDAVREVD
MVRNDVRDIQ VFAMAFGASS IDFEITWWTG SAPVDIRASR DQVVAAVKGA LDAAGIEIPF
PYRTLTLQGD ALPVQVMKGR NAAE