| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_4080 |
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| Symbol | |
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| ID | 5714635 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009958 |
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| Strand | - |
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| Start bp | 13911 |
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| End bp | 15719 |
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| Gene Length | 1809 bp |
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| Protein Length | 602 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 641276987 |
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| Product | thiamine biosynthesis protein ThiC |
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| Protein accession | YP_001542283 |
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| Protein GI | 159046614 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0422] Thiamine biosynthesis protein ThiC |
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| TIGRFAM ID | [TIGR00190] thiamine biosynthesis protein ThiC |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.902816 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.090011 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGATC TGACACCAAC CGTTACTACT GGACCCTTAC CGGCATCCCG GCGCGTTTAT
CAGCCCGGAA CGCTGCATCC CCAAATTCGC GTCCCTATGC GCGAGATTGA TCTTCACCCT
TCGGCTGGCG AACCGCCGGT TACGGTCTAT GACAGCTCTG GCCCCTATAC TGATCCCAGC
GCTAAAATCG CTATCAACGG TGGCCTGCCG CGCCTGCGGG CAGACTGGAT CGCCGCACGC
AACGATATCG AGCTTTATGA GGGTCGCCAT GTGCGTCCCG AGGATAATGG CTTTGCTGAG
GGTGCCCGGC TGGTGCCCGA ATTCCCGGTC CGCCACAAGC CGTTGCAAGC CAAGGCAGGA
CGCGCGGTCA CGCAGATGGC CTATGCCCGC GCCGGGATTA TAACACCCGA GATGGAATTT
GTCGCCATCC GCGAGAACCT TGGCCGTAAG GCCGCGAAAG AGGCTCTGGT ACGTGACGGC
CAGGATTGGG GCGCGGCCAT CCCCGATTTT GTGACTCCCG ATTTCGTGCG CGAAGAAGTC
GCCAGGGGCC GTGCGATCAT CCCCGCCAAT ATCAACCACC CCGAGGCCGA GCCGATGGGG
ATCGGGCGTA ATTTTCTGGT CAAGATTAAC GCGAATATCG GTAACTCCGC CGTCACCTCC
TCGATGGAGG AAGAGGTGGA AAAGATGGTC TGGGCCACAC GTTGGGGCGC GGATACGGTG
ATGGACTTGT CTACGGGCCG CAATATTCAC AACATCCGCG ACTGGATCAT CCGCAATTCT
GCCGTACCCA TCGGCACCGT TCCGCTTTAT CAGGCGCTGG AAAAGGTCGA GGGTATCGCC
GAAGACCTAA GCTGGGAGGT GTACCGCGAT ACGCTGATCG AACAGGCTGA ACAGGGGGTG
GATTACTTCA CCATTCATGC TGGCGTGCGG CTGCATATGA TCCCGATGAC GATAAAGCGG
GTGACCGGGA TTGTATCGCG CGGCGGCTCG ATCATGGCGA AATGGTGCCT GCATCATCAC
CGCGAAAGTT TCCTTTACGA GCACTTCGCT GAGATCTGCG AAATTGCCCG GGCATATGAC
GTCAGCTTCT CTTTGGGGGA TGGGTTGCGT CCCGGCTCTA TCGCGGACGC CAATGATGAG
GCGCAATTCG CCGAACTGGA GACGTTGGGC GAACTGACGC AGATCGCATG GAAGCATGAC
TGTCAGGTGA TGATCGAAGG ACCGGGCCAT GTAGCCATGC ACAAAATCAA GGAGAATATG
GACAAGCAGC TGGAGGTCTG CGGCGAGGCG CCGTTTTATA CGCTCGGGCC GCTTACCACG
GATATCGCAC CGGGATATGA CCACATTACC AGCGGTATTG GTGCGGCGAT GATAGGCTGG
TTCGGCACGG CGATGCTTTG CTATGTCACT CCCAAAGAGC ATCTAGGTCT GCCTAACCGT
GACGATGTGA AGATCGGTGT CATCACCTAC AAGATTGCGG CTCATGCTGC CGATCTGGCC
AAGGGGCATC CGGGAGCGCA GATCCGAGAT GACGCGTTGT CACGCGCGCG GTTCGAGTTC
CGCTGGGAGG ATCAGTTCAA CCTCTCGCTT GATCCCGAAA CCGCGCGCTC GATGCATGAC
GAAACCTTGC CGAAAGAGGC GCATAAGGTC GCGCATTTCT GCTCCATGTG CGGACCGAAG
TTCTGCTCGA TGCGGATCAG CCACGATATC CGCGCCGAGG CGCAGAAGGA CGGCATGGCG
AAAATGGCCG AGAAGTTCCG CAAAGGCGGT GATCTTTATG TTCCTCTTGA TAAGGTAAAG
GAAATATAA
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| Protein sequence | MKDLTPTVTT GPLPASRRVY QPGTLHPQIR VPMREIDLHP SAGEPPVTVY DSSGPYTDPS
AKIAINGGLP RLRADWIAAR NDIELYEGRH VRPEDNGFAE GARLVPEFPV RHKPLQAKAG
RAVTQMAYAR AGIITPEMEF VAIRENLGRK AAKEALVRDG QDWGAAIPDF VTPDFVREEV
ARGRAIIPAN INHPEAEPMG IGRNFLVKIN ANIGNSAVTS SMEEEVEKMV WATRWGADTV
MDLSTGRNIH NIRDWIIRNS AVPIGTVPLY QALEKVEGIA EDLSWEVYRD TLIEQAEQGV
DYFTIHAGVR LHMIPMTIKR VTGIVSRGGS IMAKWCLHHH RESFLYEHFA EICEIARAYD
VSFSLGDGLR PGSIADANDE AQFAELETLG ELTQIAWKHD CQVMIEGPGH VAMHKIKENM
DKQLEVCGEA PFYTLGPLTT DIAPGYDHIT SGIGAAMIGW FGTAMLCYVT PKEHLGLPNR
DDVKIGVITY KIAAHAADLA KGHPGAQIRD DALSRARFEF RWEDQFNLSL DPETARSMHD
ETLPKEAHKV AHFCSMCGPK FCSMRISHDI RAEAQKDGMA KMAEKFRKGG DLYVPLDKVK
EI
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