| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3985 |
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| Symbol | |
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| ID | 5714514 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009957 |
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| Strand | + |
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| Start bp | 43526 |
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| End bp | 44602 |
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| Gene Length | 1077 bp |
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| Protein Length | 358 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 641276898 |
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| Product | TrbL/VirB6 plasmid conjugal transfer protein |
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| Protein accession | YP_001542194 |
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| Protein GI | 159046524 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3704] Type IV secretory pathway, VirB6 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.257562 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTGTCG TCACCTACTT CGTTGAAACC TCCCAAGCCT ATCTCGACAC CGCCGCTGAG
ACCCAGTTTG GTGCGGTTGC AGCAACGGTC GGCACGCTCC TGGTTTTGGG GACAACGCTG
GTAGTGATCC TCGTCGGAAT CAACATGATC TATCAATATC GGGCCATGGA TGGGCACACA
GCCTTCTGGC TCGCGGTCAA GATCGGGCTC ATCGGGATAT TCGCGACCAA TTGGATGCAG
TTCAACGCGT TCTCGTCAGC CATTCTCTAT GGGATCGACA GTATCGCGGG TGCGCTGATA
GCCTCCGTCG GCGGCGGCAG TCCGGGGCCC TCTGGAACTT TCGCCGAAGA ATTCGACCGG
CTGATCGCGG AACTGGGCGA CTATTTGAAC GCTGCCGGGT CCGAACTGAA CTGGATGGCC
GGCGCCATGC TCGACATCGT CGGTGTTCTT CTGCTCTCAA TCCTCGGCGG ACTGGCCGCC
TTCATCCTCG TGGCCTCCCG CCTGATGATC GCGCTCCTGA TCGGGATCGC CCCGGTGATG
ATCTTCCTGA CCCTCTTCGA GGTCACCAAG GATTATTTCA CGCGCTGGCT GTCCGCGCTG
ATTTCCTTTG CGCTATACCC CATCGTCGTC GCAGGCGTGT TCGCAACGAT CACAGGCGTT
TCCTCCGCAC TCATCGGTGA ACTAGGCGAT CCCGAAGGGG CCTCAAACAT CGGCGCGCTC
ATCCCCTTCT TCATGATGGT GCTCATGGCC AAGGGTTTCA TTATCGCCAC GCCCTTCATC
GTCCGCGCGA TCTCCGGCAA CATCATGATG CCCGCCCTCT CCGGAGGTCT CGGCGGCGGC
TACAGCTTTG CCCGCGCCGC CATGGGAGGT CAGCAGGCCT ACAATCGCTA CCTCATCGGC
GGGGCCAGTG GCGCAGAATA CGCAGCCCTC AGGGCGCGGC AGTTCTTTGG CGTGCAGCAG
ATGCCTGCAA GGCAAGGCAT GGGGCAGAAG GGTTCCGGAG GAAGCACAGG ATCCGCAGAC
TCGGGATCAA AAATGCTGGC GCAGCTTGCG AGACTGGCAC GACTTGGTCG ACGGTGA
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| Protein sequence | MSVVTYFVET SQAYLDTAAE TQFGAVAATV GTLLVLGTTL VVILVGINMI YQYRAMDGHT
AFWLAVKIGL IGIFATNWMQ FNAFSSAILY GIDSIAGALI ASVGGGSPGP SGTFAEEFDR
LIAELGDYLN AAGSELNWMA GAMLDIVGVL LLSILGGLAA FILVASRLMI ALLIGIAPVM
IFLTLFEVTK DYFTRWLSAL ISFALYPIVV AGVFATITGV SSALIGELGD PEGASNIGAL
IPFFMMVLMA KGFIIATPFI VRAISGNIMM PALSGGLGGG YSFARAAMGG QQAYNRYLIG
GASGAEYAAL RARQFFGVQQ MPARQGMGQK GSGGSTGSAD SGSKMLAQLA RLARLGRR
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