| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3982 |
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| Symbol | |
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| ID | 5714511 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009957 |
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| Strand | + |
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| Start bp | 40545 |
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| End bp | 41924 |
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| Gene Length | 1380 bp |
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| Protein Length | 459 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641276895 |
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| Product | conjugation TrbI family protein |
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| Protein accession | YP_001542191 |
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| Protein GI | 159046521 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2948] Type IV secretory pathway, VirB10 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGATA CCGGGAACAC CGAGCTGGAA AAACGCCTCG CCGCCCTTGA GAAAGGCAGT
GCCCGCGCGC CCATAGCGGC GCAGCGCCGG TCGCCCTTTC TCGCGCTGAT CGTGGTCCTC
GTCATCGGCG CAGGTGGTGC CCTGCTCTAT CTCCTCTCAC AGCCCGACGA AGAGGAAGCC
TTGCCGACGG CCACCCCGGA CGTCTTCCAA AACGAGGGGG ACGGCTTTGG CGCTATCGAG
ACCTTGCCCC CGCCCGAGCC CGAGGTTGTG TTCGTCGGAC CAGACCCCGT CGAGCCCAAC
GCGGAGCTTC TGGCGCAGAT CACCGCGCTG CAGGCTCAGA TCGAGGAATT GCGCAACGCC
CCCGAACCGG TCGTCGAGGA AGACACCGCC GCCGCAGAGG CGATCGACGC GCTGACCGCT
CAGATTGCGG CGCTACAAGC CGCCTCGGAA GCCGCACAGC AACGATTCCA GGACGAACTG
ACGGCGCGGG ATCGCAGCCT TGAGCAATTA CGCATGGATC TGGAACTGGC CCAACTCGAG
GCCAGCCGAC CCCAACCCGC CCCAGCGGGC CCCACGGAAG ATGAGCTGCG CGCACGCGAG
CAAGAGCGAC TGCGCCGGGA GGAAGAAGCC CGGCGCATGG CCGAGCTGGA GCGCCGCGCC
GCGGAGGAAC GCGCCTTCCA GGAACGGCGC ATCACCTCGC CCACTATCGC ATTTGGCGGC
ACGTCCGGAG CGAATGAAAC GGCTCTGACC GAACGCACTT TTGGCGAGGT GACGGATTTC
GTGCTGAACG GTGCGCTGCC CTCGACGGTG ACGCAGGCCG AGGTGATCGC CAATCCCTCC
AACACCATCA TCCAGGGCAC CATGATCCAA GCCGTCATGG AAACTGCCCT TGACAGCTCC
CTGCCCGGCC AGACCCGTGC CGTGGTGTCC GAAGATGTCT ACAGCGTCGA TGGCGTGCGC
CTCTTGATCC CCCGCGGATC GCGTCTCATC GGACGCTACC GCGCTGGCGT CGATATCGCG
CAGCGCCGCG TTACGATCGC CTGGGACCGG ATCATCCTGC CCGCGGGCCA GACCGTTCAG
ATCAGCTCCT TCGGAGGTGA TGAACTGGGC CGTTCTGGCG TCACCGGTTT CGTGGACACG
CGCTTTGCCG AGCGTTTCGG GTCGGCCGCC CTGATCTCGC TGATTTCCGC CGCACCAAGT
GCCGCCGCCT CCGAGGTCCA GGATGAGACT GCGGCCGACG CTCTCGAAGA CGTGGGCGAT
GATCTGGCAG ATGCGACGGA CAGCGTCATC GGCGATTACC TCTCCATCGG CCCCGTCATC
TATGTCGACC AAGGCGCGCG CGTCACTGTC ATGGTCGACC GCGATCTGGA GATATTCTGA
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| Protein sequence | MSDTGNTELE KRLAALEKGS ARAPIAAQRR SPFLALIVVL VIGAGGALLY LLSQPDEEEA
LPTATPDVFQ NEGDGFGAIE TLPPPEPEVV FVGPDPVEPN AELLAQITAL QAQIEELRNA
PEPVVEEDTA AAEAIDALTA QIAALQAASE AAQQRFQDEL TARDRSLEQL RMDLELAQLE
ASRPQPAPAG PTEDELRARE QERLRREEEA RRMAELERRA AEERAFQERR ITSPTIAFGG
TSGANETALT ERTFGEVTDF VLNGALPSTV TQAEVIANPS NTIIQGTMIQ AVMETALDSS
LPGQTRAVVS EDVYSVDGVR LLIPRGSRLI GRYRAGVDIA QRRVTIAWDR IILPAGQTVQ
ISSFGGDELG RSGVTGFVDT RFAERFGSAA LISLISAAPS AAASEVQDET AADALEDVGD
DLADATDSVI GDYLSIGPVI YVDQGARVTV MVDRDLEIF
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