Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_3973 |
Symbol | |
ID | 5714502 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009957 |
Strand | + |
Start bp | 33535 |
End bp | 34149 |
Gene Length | 615 bp |
Protein Length | 204 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 641276886 |
Product | lytic transglycosylase catalytic |
Protein accession | YP_001542182 |
Protein GI | 159046512 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGTGCTGG TCATGGAGAG CGATGGCTCT CTGACCCCGT CCCGCTCCCA GAACAGCTTT GCCCGCAATT ACAATGATGG CATTGGACAG GGGTCGGCGG CTGATGGGCT GGCGATACTC GGTGAGACTG ACCTTGGGCC AGACGAAGTT CAGGTTGCTG CCCTTGCGCG GCCTGCTCCC CTACCCCGCG CTGAAGTTCT AAATGCCATA GAAGCCACCG CCCTTCGCTA TGCCGGGCAC CCTGCGCTGC GCCGCGCAGA CCTCTCGGTT CGTGATTGGC TGACGCTCTA CCGTGCCAAT ATCGAAGTCG AGAGCGCCTA TCGGCAGGAT GCGGTCTCGA GTGCTGGCGC CATTGGCCTT GGTCAATTGA TGCCCGCGAC GGCGCGCGAT CTTGGCGTCG ATCCGCGTGA TCCCCTTCAA AACCTCGACG GCTCCGCCCG CTATCTTGCG ATGATGCTGA ACACGTTTGG CGATCCGCGT CTTGCCCTCG CGGCCTACAA CGCCGGGCCG GACGCTGTGC GCCAGTACGG CGGCATTCCC CCCTACAGAG AAACCCAGAA CCACGTGGCC CGTGTCATGG CCGTCGTGGC CCGATTGGAA GGATCAAATT CATGA
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Protein sequence | MVLVMESDGS LTPSRSQNSF ARNYNDGIGQ GSAADGLAIL GETDLGPDEV QVAALARPAP LPRAEVLNAI EATALRYAGH PALRRADLSV RDWLTLYRAN IEVESAYRQD AVSSAGAIGL GQLMPATARD LGVDPRDPLQ NLDGSARYLA MMLNTFGDPR LALAAYNAGP DAVRQYGGIP PYRETQNHVA RVMAVVARLE GSNS
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