| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3947 |
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| Symbol | |
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| ID | 5714476 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009957 |
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| Strand | + |
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| Start bp | 15242 |
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| End bp | 17428 |
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| Gene Length | 2187 bp |
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| Protein Length | 728 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641276860 |
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| Product | heavy metal translocating P-type ATPase |
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| Protein accession | YP_001542156 |
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| Protein GI | 159046486 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG2217] Cation transport ATPase |
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| TIGRFAM ID | [TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC
[TIGR01512] heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase
[TIGR01525] heavy metal translocating P-type ATPase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGCGATCC TGAACCGGGT TGTCGGGCCG AAAGTGGGCG GAACCGAACA CCTGGCATTC
GACGTGATCA ACGGGCGAAT GACCATCCTC GATAGCGCCG AGAGGATACC AGACGACGAA
GTCACGCAGT TGGTCGCAAC GACCGGCATG AGCGCCAAGC CATGGGATGC CGACAACGCA
GCAGAGGACC AGGCGGCGCA TCTGGCACGT CAGAAGCGCT TTACCTCGTT GAGCGGCGGC
TTCTGGGCGG CGGGATTCCT TTTTCACATT GTCGAGACCG GCATGGGCGG CGCGCTCGGG
CTCTTTGCGG GCCATGGCGA GGTGCCTATG CCTATGGTGG AAGCAGGGAT CTTCGCCGTC
GCGATTCTTT TTGGCGTCTG GCTTGTCGCG CCCAAGGCCT GGTCTTCGGC GCGGAGGCTT
AGCCCCGACA TGAACCTGCT CATGGTGGTG GCCGTCGCGG GCGCCATCGG CCTCGGCGAG
TTTTTTGAGG CCGCGACGGT CGCCTTCTTC TTCTCGCTTT CGCTTTATCT TGAGAGCTGG
AGCGTGGGGC GGGCGCGTAA TGCGGTTTCC GCGCTCCTCG ATCTGGCGCC GCCAACGGCG
CGGGTTCTTT ACGACGACGG ATCTGAATCC GACGTTCCGG CCGCGGCCGT GGCAGTCAAT
GCAAGGTTTA TCGTGCGCGG CGGCGACCGG ATCCCCCTCG ACGGTGAGGT CGTGGACGGG
GCAGGGGCCG TCGATCAGGC CCCAATTACT GGGGAAAGCG CGCTAGTGCC CAAGGAACCA
GGCGACGAGG TCTATGCCGG CACGATCAAC GGCGAGGGCA CACTGACGGT GCGGGCGACG
AAGGCCGCCT CGGACACGGT GCTCGCGAAA ATCATTCGCA TGGTGGGCGA TGCCCATGCC
CGCCGCGCGC CGGTCGAACA GTGGGTGGCC AAGTTCGCGC GCATCTACAC ACCCATCGTG
ATGGCTTTGG CGATCGCCAT CGCGCTGGTG CCGCCACTGC TGCTCGGCGG CGCCTGGGAC
TACTGGTTCT ACAATGCTCT GGTCCTTCTG GTCATCGCAT GTCCTTGCGC GCTGGTCATT
TCTACGCCGG TCTCCATCGT GGCAGCGCTG ACCGCGTCGG CACGGGCGGG GGTGCTCATC
AAGGGCGGCG CCTATGTCGA GGCGCCGGGG CGGACCACGG CACTGGCGAT GGACAAGACC
GGGACGATCA CCATGGGCGA GCCTGAGGTG GCGGCGGTTC ACCCACTGGT CGGCGTTTCC
GCACGCGATC TCATGGCGCT GGCAGCAAGC CTGGAGGCGC GGTCTTCACA CCCGCTGGCA
CGCGCCATCC TCTCGCGCGC CGAAGCCGAT GGTGTTTCCG TGTCTGCCGC AGAGGACACC
CGTACCGTGC CCGGGCGCGG TCTGGAAGGA CGCGCCGACG GGCGCGCTAT CTGGCTCGGC
TCGGATCGCT TCGCCGAAGA GAAGGGGTTC GGCAATGCCA TTCCGGCGGA TCTGCGGGAT
CGGATCGAAG GGGCAGGGAG CACCCTCGTT GCCGTGGGTG ACGAGACCGG CGTGACCGGC
GTACTGGAGC TTCGCGACCG CATCCGCCCA GATGCAAAGG GGATCGTTGC GCGTCTGCAT
GCGCAGGGTG TGAAGACCAT CGTGATGTTG ACGGGCGACA ACGAACGCAC CGCGCGCGCG
GTGGCAGCCG AAGTCGGCAT CGACGAGGTG CGCGCCGAAC TTTTGCCAGA AGACAAGGTG
ACGGCCATTG AGGAACTCGT CGAAAGCCAC GACATGGTGG CGATGATCGG CGACGGTGTG
AATGACGCAC CGGCCATGGC GCGGGCGCAT TATGCCATCG CCATGGGCGC TGTCGGATCG
GATGCCGCGA TCGAGACGGC CGACATCGCG CTGATGACCG ACGACATCGG CAAGGTACCC
TGGCTTATCG GCCATTCGCG CCGTGCCATG ACGATCATCC ACCAGAATAT CGGCATATCG
CTGGCGACCA AGGCGCTGTT CGTCGGGCTG ACCGCGTTCG GTATGGCCTC AATGTGGGGC
GCCATTGCTG CGGATGTAGG CGTGTCTCTG CTGGTGGTCG CCAACGCACT TCGGCTCCTG
AACGGCCATC AGGTTGAGGC CGGGCCTTCA GGCGGAGAAC CGGTGGGCGA GCAGATGGCG
AAAGGAGCAC TGGCGCACGG TCATTGA
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| Protein sequence | MAILNRVVGP KVGGTEHLAF DVINGRMTIL DSAERIPDDE VTQLVATTGM SAKPWDADNA
AEDQAAHLAR QKRFTSLSGG FWAAGFLFHI VETGMGGALG LFAGHGEVPM PMVEAGIFAV
AILFGVWLVA PKAWSSARRL SPDMNLLMVV AVAGAIGLGE FFEAATVAFF FSLSLYLESW
SVGRARNAVS ALLDLAPPTA RVLYDDGSES DVPAAAVAVN ARFIVRGGDR IPLDGEVVDG
AGAVDQAPIT GESALVPKEP GDEVYAGTIN GEGTLTVRAT KAASDTVLAK IIRMVGDAHA
RRAPVEQWVA KFARIYTPIV MALAIAIALV PPLLLGGAWD YWFYNALVLL VIACPCALVI
STPVSIVAAL TASARAGVLI KGGAYVEAPG RTTALAMDKT GTITMGEPEV AAVHPLVGVS
ARDLMALAAS LEARSSHPLA RAILSRAEAD GVSVSAAEDT RTVPGRGLEG RADGRAIWLG
SDRFAEEKGF GNAIPADLRD RIEGAGSTLV AVGDETGVTG VLELRDRIRP DAKGIVARLH
AQGVKTIVML TGDNERTARA VAAEVGIDEV RAELLPEDKV TAIEELVESH DMVAMIGDGV
NDAPAMARAH YAIAMGAVGS DAAIETADIA LMTDDIGKVP WLIGHSRRAM TIIHQNIGIS
LATKALFVGL TAFGMASMWG AIAADVGVSL LVVANALRLL NGHQVEAGPS GGEPVGEQMA
KGALAHGH
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