| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3911 |
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| Symbol | |
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| ID | 5714440 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009956 |
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| Strand | + |
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| Start bp | 139092 |
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| End bp | 140549 |
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| Gene Length | 1458 bp |
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| Protein Length | 485 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641276824 |
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| Product | protease Do |
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| Protein accession | YP_001542120 |
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| Protein GI | 159046449 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTATTGCT TACCCGCCCT TCCACGCGCT CTTGCGGTCC TTGCCCTACT GCCCGCTGGT
GGCTCAGCCC TGCCGGCCAT AGCGCAACAG ACAGATTTCG ACAGTCCGAC CGATTTCTCC
GAAATGGTGA CGGAACGCCT GCCTGCCGTG GTCGGTATCC TGTCGACCGG CCCGGCGCCT
GATCCGTCGC CTGCGATCCA GCCGCAACTG CCGCCCGGGA TGCGAGAGTT CTTCGGCGGC
CCAACGCCGC CGACCCCGCA AGGCCCGATG CGGACCCAAG GATCGGGGTT CATCATTTCG
CAGGATGGTC TTGTCGTGAC GAATAACCAT GTGATCGCAG GCGCGGAACA GATCGAGGTG
ATTATGAATG ACGATCGGCG GCTCGATGCG GAGTTGATCG GGACCGACCC CGCGACTGAT
ATAGCGCTCC TGAGGATCGA AAATGTCACC GATCTGCCCC ATGTCGTCTG GGGGTCTTCC
GACGATCTGT CCATCGGCGA GTGGGTCGTG GCCATCGGCA ATCCCTTTGG CCTCGGGGGT
ACGGTGACCG CCGGGATCGT GTCTGCACGC GCTCGGGATA TTAACGCGGG ACCCTATGAC
AGTTTCATAC AGACCGATGC CGCAATCAAT TCCGGCAACT CGGGAGGCCC GCTCTTTGAT
GTCTCGGGCG ACGTCGTGGG TGTCAACACC GCGATCTTCT CGCCGACGGG CGGCAATGTC
GGCATCGGCT TCGCTGTACC GTCGGCCGTA GCCGAGCGCA TTGTGGACGA TCTGCAAGAC
GATGGACGAG TCGAGCGAGG CTGGCTCGGC GTGCAGGTGC AACCGGTGGA CGAGGCCCTA
GCCCGGGCTT TCAAGTTTGA AGACCCCCAA GGGGTACTGC TTGCGGATGT CACGAAGGGC
AGCCCGGCCT TCGAGGCGGG GTTGGAGCCG GGCGACGTCC TGCTCGAAAT CGACGGCGCC
GCCGTCGACA CACCCCGCGA TCTGACTTTT GCCGTGGCTG ACACGCCCGT CGGTGCCACG
GTCATGGTGA CCTACCTGCG CAACGGCAAC AGAGTTCAGG CGGAGGTTAC CATCGGGCAG
CGGCCCGACC TGCAGTCCGC CACAGCCCAG CCTGATGCCG GGGGCCGCGA TGACAGGTCG
GACGCGGACG GCCCGCGCAT AGGCGTGTCC GTCGCGCCGC TGTCTGGTGA GCTCCGCGCG
CAAGCCGGTA TCCCGAACGA GGTGTCGGGC CTGCTGGTGC AATCAGTTAC GCAGGGCAGT
CCCGCCGCCG AAGCAGGTCT TCGCGCCGGC GACGTCCTTG TGGAGGCTGC TGATGTCACG
TTGGGGCAGG TCGAAACACT GCGCGATGCC ATCGCGCGCG CGGCCGAAGA GGGTGAGACG
CTGCTGATCC GGGTTTTCCG CGGGCAAGGG TACAATTTCG TGGTGGTCAA TCTGAGCGAA
GAGGTCGTGT CGAAGTAA
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| Protein sequence | MYCLPALPRA LAVLALLPAG GSALPAIAQQ TDFDSPTDFS EMVTERLPAV VGILSTGPAP
DPSPAIQPQL PPGMREFFGG PTPPTPQGPM RTQGSGFIIS QDGLVVTNNH VIAGAEQIEV
IMNDDRRLDA ELIGTDPATD IALLRIENVT DLPHVVWGSS DDLSIGEWVV AIGNPFGLGG
TVTAGIVSAR ARDINAGPYD SFIQTDAAIN SGNSGGPLFD VSGDVVGVNT AIFSPTGGNV
GIGFAVPSAV AERIVDDLQD DGRVERGWLG VQVQPVDEAL ARAFKFEDPQ GVLLADVTKG
SPAFEAGLEP GDVLLEIDGA AVDTPRDLTF AVADTPVGAT VMVTYLRNGN RVQAEVTIGQ
RPDLQSATAQ PDAGGRDDRS DADGPRIGVS VAPLSGELRA QAGIPNEVSG LLVQSVTQGS
PAAEAGLRAG DVLVEAADVT LGQVETLRDA IARAAEEGET LLIRVFRGQG YNFVVVNLSE
EVVSK
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