| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3872 |
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| Symbol | |
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| ID | 5714401 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009956 |
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| Strand | + |
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| Start bp | 88354 |
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| End bp | 94041 |
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| Gene Length | 5688 bp |
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| Protein Length | 1895 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641276785 |
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| Product | hemolysin-type calcium-binding region |
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| Protein accession | YP_001542081 |
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| Protein GI | 159046410 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG2931] RTX toxins and related Ca2+-binding proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.308786 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGTGCCTG TATTCGAGAT TCCCCAGAAG GAGATTCCCA TGACAACCTA TAATGTGCGC
GGCATTGCCG TGACCTATGA CGCTTTCGTG GGCTCTGATC TTCCGATCAA TCTTGGCAGC
GCCATCCTGC AACTCACCGG GTCGGACGGG GCGACGTTCA GCTACGAGCT GGGCACGCCG
CCCGAGCCGG GTGCACCGCC CCGGGCCGTT CTGGACACCA GTGAGATCAT CGGCGCCCGG
CTGTCCGGGG AGCCGCTGGA CAGCGAGGAG GAGTTCATCC TGAACCTGCG CTGGCGGGAT
GGGCCCATAA CCCGAGAGAC AACGGTTCTG GTTCTCTATG TCGAGGACAG CCCGGAATTC
GGGGTGGACA CCGATTACAT CTTCTACCTG GGCGGTGCCC CCCTGCCCGA GTTGCGGACC
GTGCAGGACT GGGAGGCTTT CGACGACACC ATCCTCAGCA TCGCACCCCC CACGTCGGGA
CCCTTCGCGC CCGGCGCCGA TATCGTGATC GAGGACCTGC CGAGCCTGCT CGGCCCTACC
AAGACCTTTA CCCTGCAAGG CACCATGATC GTCTATGACG ATAATGTCGG TTTCGGCGAG
GCCGACGATG TGATCCCCGC CGAGGTGGTG TTCACCGCCC CCGAGGATGC GGTCTTCAGC
TACACGGTCG AGGAAACCGG CGATCCGGAC ACACCGTTCA TCTTGACCCT CGACAGCGGT
CAGATCCTCG GTGCCATCTT CAATGGAAAT CCCGATATCG AGATCGCCGG AGAGCTGTTT
CTCGACGTCA CCTGGCAGGA CGCGGGCAAC GTCACCCGCG AGACCACGGT GCTTGCCCTG
TTCGGCTTCG ATCCGGACAA TTTCTTCGTG AGTTTCGACT ATATCTTCTA CCTGGACGGG
CACCCCCTGC CCGACTTCCA GACCGTTCAG GACTGGGAGG ATTTCGACGA CAGTGTCACC
GCGGTCGATG TCCCCTCTTC CGGCCCCTTC GCGCCGGAGA CCGACATCGC GCTGGCGGAT
CTCTTCGGGG TGGTGGTGGC CGATGCGCCC GGCAACATCA TCCTCGGCAC GGAAGGCGAC
GACAATTCCG ACCTGCCCCC GGGCGAGGAC ATCTTCGGCA CAGATCTCGA CGACGATATC
CGGGCGCTGG CGGGCGACGA CTTCATCAAC GTCAGCTTCG GCTTCGACCT CATCGATGGC
GGGACCGGCT TCGACGTCAT GAACTACGAG GGCAGTGGCC CGGTCTTTGT CAACAACACC
GGAGCCACGG TGATCGATGA CTGGAACGGG GAGGAGGCCG AGGTCGGCCC CTTCCAGGTT
CTCAAAGGCT TCGGCGGGTT CGAGGGCGTC GACGGGTTGA CCGACATCGA GGCCTTCGAA
CTCAGCCAGT TCCACGACGT GGCCTATCTG GGCGACAATG CCGACGGGCT GACCTTCGCT
TATGACCTGG CCGGGGACGA CAAGGTGGTC GCCGCCCAGT CCGGCCTGAC CGCGACGACC
TTCATCGCCG GGTCCGGCAA CGATATGTTC ATCGGGTCCT CCAACCCGTT CGATTTCCTC
GATTACGGCG AACAGGCCGA GGACGACGAT GATGCGGCAG GCCCTGCCTT CCGGGGCATT
TTTGTCGAGT TCACTGGCGG CGGCAACGGC ACGGCCACCG ATCCCTGGGA CGGGTTCGAC
ATGTTCGAGG GGATCGAGTT TGTCGGCGGC ACCCGGTTCC AGGATATCTT TGTTGGGGAC
GAGACCGACA ACATCTTCCA CGGCGAGGGG GGCGACGACA TCTTCATTGG CGGCGCGGGC
AATGATTTCA TCGATGGCGG CCCGGGCGAG ACCGAGGACG ACGAGGATTT CGACACGCTG
ATCTACGCCA ACGAGACCGG CGAGGCAGGC ATCTTCGCCG ATATGGGTAC CGGGCTGATC
GTCGACACCT TTGGCGATAC CGACACGGTT GTCAGCATCG ACCGGGTCAT CGGTACCATG
GACGAGGACG TCTTTGTCGG CTCGGATTTC CAGGACTTCA TCCAGTATGT GGGCCTGGCG
GGCGAGGACG TGTTCTTCGC CGGGGCGGCC TACGAGACCC TGCGCTACCG GGAGGACGAC
GATTTCGGCG CGCTCCACGG GGTCTATGTG GACCTGGCGG CAAACTTCGC CATCGACGGC
TTCGGCGACG AGGACACGAT CATCACCGAT GACGGTGAGA TCGACCGCGT CCGCGGCTCG
GACTTCAACG ACGTACTGGC CACCAGCAAT GTAGGCGCGC GGCTCGAGGG CGAGGACGGC
GACGACTTCC TCAAGGGCAG GCTGGGCGAG GATCGGCTCG AGGGCGACGC AGGCAACGAC
ACGATCCTCG CGGGCGCAGG CGACGACCAG CTCAGCGACG GGCGCGGCTT TGACTACCTC
AATGGTGGCG CGGGTTGGGA CCTGTTCTTC CGGGACATCG GGCAGGACTT CGAGGATTTC
TCCTGGACCC CGGTGGTCGA CCTGACAGAA GGCAAGTTCT TTGATCCTTC CGAGGATCCC
GCCCTATTCG ACATCCTGGA GAATATCGAG GCGGTCTCAC TCGAGGGCAA TTTCAACATG
ACCCTGATCG GGGATGACGG GGACAACTTC CTCGAATCCG ACGCCGGCAA TGATCTGCTC
GAGGGCAATG GCGGCGATGA CGAGCTTGAT GGCGGCGATG GGGACGACAC GCTCAATGGC
GGGGATGGCA ACGACCTGCT GTTTGGCGGC GAGGGCAATG ACGGCCTCTA TGGCGACGCG
GGCGATGACG AGCTCTATGG CGAGGCGGGC GACGACACGC TCGAAGGCGG CGACGGCGAC
GACTACCTAA ATGGCGGCGG CGGCAACGAC GTGATCAATG GGGGCGACGG GGACGATTTC
ATCGACATTG GCGGCTCGGG CGTGGCCACG GTGGATGGTG GCGAAGGCTG GGACACCTAT
TTCGTCGACC TGACCGGGTT CAACCCGGGC GATTTCATCT ACGAGCTGAA CCTGATCACC
GGCTATGCCG GGGTCTTTGG CAACCCGTTC AACTCGGATT TCGTCGCGGA TGTGGAAGAG
ATCCTGGTCG AGGGCGACCT CGAGACGCGG CTCACCGGCA CCAATGAGCG CGAGATCTTC
AATGGCGGTG ACGGCAATGA CGAGATCACC GGCAATGGCG GCGATGACGA GCTGATCGGA
AATGACGGCA ACGACACCCT GATCGGCGGC GACGGGCGCG ATTTCCTGGC CGGCGGCGAT
GGCGACGACA CGCTCGACGC CTCCACGGGC GCCGCGAGCA CCCAGGGCTT CGGGGATTAT
ATCCGCGCGG GTCTGGGCTC GAACACGATC ATCGGCCATG CGGCCCTCTT CGCCGCGGGC
GAAGGGATCG ACATCTCCTA CGCGGACCTC GCGGGCATCG GCGGGGTCAC GATCACCGTG
GGCGCAAACG GCACCGGCAC CACGGTCAGC GGCACGCCGG GCCAGGTGGA TGATACCTTC
ACCTTCGCCC ATTACTTCGA AGGCTCCCGG GACGGCGACA CCTTCACCGG CTCGAACAAT
GCCGATTTCG AGGGCTGGGT CGGTCTTGAC GGTGCGGATG ACTTTGACGG TGGCGGCGGC
TTCGACGTGC TATTCTACGA CACGGACGAG GCCTATGGCG GCGCGGGTGG AATCATCGCA
ACTTTCGCCG ATGGCGCCGG CACGGTCGAG GACAGCTGGG GCAATCTCGA CACCTTCACC
GATATCGATG AGATCGTCGG CTCGCAAAGC GACGATGTCA TGGAGGCCAC AGGCAGCACC
GGGGTCCGCT TCGACGGCGA GGATGGCGAC GACCTCCTGA TCGGCACGGA CGCGGACGAT
GTCCTCAGGG GCGGCGATGG CGATGACGAG ATCCACGCCG GGCTCGGCAC CGACGAGATC
GATGGCGGCG AAGGGTCCGA TACGCTGGTC ACCGATGTCA CCGGCCTCGG GCCGGACCAG
ATCACCGTGG ATCTCGACCC GCTGGCGGGC TCGCAGACCA TCGCGGGCGA AGGCCCCGGC
GCGGCCGATA CCCTGGTGGG GACCGAGAAC TTCACCCTGA CCGGGGACTG GGACGCGACC
GTCATCGGCT CGGACGCGGC CAACATCATC ACCACCGGCG GTGGCGCGGA CGACATCACC
ACCGGACTTG GCCGCGACAC GGTCAATGCG GGCGCGGGCG ACGACGTGAT CGACGCCTCC
GCCGGGGATC TCGCCTCCGA GGGCTTCGGC GATCGCATCC GGCCGGGTCT CGGGTCGGAC
ACGGTGCTGG GCTCGGCCAC GCTCTATGCC CAGGGTGGCG GCATCAACCT GGCCTATTTC
GACGTCTCGG GCGTGAGCGG GCTCACCATC ACCGTGGGGG TCAACGGCTC CGGCACCGTG
GTCAGCGGCA CCGCCGGGCT GGTCAACGAC AGCTTCACCT TCGCCGATGT CTTCGGCGGC
AGCCAGGACG ATGACGTGAT CACCGGCACC GACCGGGCCG AGTACGAAGG TTTCCAGGGC
TATGGCGGCA ACGACGTGAT CGACGGGCGC GGCGGGTTCG ACGAGGTCTA TTACCTCAAT
GCCTCCGGCG CGGTGCAGAT CAACCTGCAA AACGGATCGG TGACCGGGGC CGACGGCACC
GATACGCTGC TGAACATCGA GAGCATCTTT GCCTCGCACC ATGACGACAC GATCCAGGGC
AGCACTGCGC GCGATCAGGT CAACGGGGGC GACGGGGATG ATGACATCAA CGCCCGCGGC
GGTTTCGATC TGATCGATGG CGGGGCCGGC AATGACACCA TCAATGGCGG GGTCGGGTCC
GATGTCCTGA ACGGGGATGG CGGCAATGAT ACGATCATCG CCGGGGACGG GTTCGACGAG
GTCGATGGCG GCGCTGGCGA TGACCTGCTC AAGGGCAATG CCGGCAACGA CTTCATCGCC
GGCGGCGCCG GGGCCGACCG GATCGAGGGC GGCATCGGGC GCGACATGCT CCATGGCGGC
GATGACGACG ACGACATCTC GGGCGCCGAG GGCTTCGACG AAATCTTCGG CGATGCCGGA
GATGACCTGC TCAGGGGCAA TGCCGGTAAT GACACGATCG AGGGCGGCGC TGGCGACGAC
CGGATCGAGG GCGGCATCGG AGCCGATACC CTCCGCGGCG GGGTGGGCAA CGACGAGATC
GTGGCCTCCG AAGGCTTCGA CGCGCTTTTC GGCGAGGATG GGGACGACAC GCTTCTGGGC
AATGCCGGCA ATGATCTGCT CGAAGGGGGC GCCGGTATGG ACGCGCTCTT TGGCGGCCAG
GGGGCCGATA CGCTGCGGGG GGGCGATGGC GACGATATCC TGCGCGGTGA AACCGGGGCC
GATACGCTGA TCGGCGGGGT CGGAGATGAC GAGCTGCGCG GCGGTCAGGG CGGTGACCGG
CTCAGTGGCG GGGCGGGCAA TGATATCCTC GTGGGCGGCT CCGGCGCGGA TGTGTTCGTC
TTCGAGGGCG GGGTGGACAC GATCACCGAC ATGTCGCTGA TCGTGGACCG GATCGAGATC
GACGGGGATG CGCTCGGCAT CGCCGGGCTC ACCGGCGCGC AAGTGCTCGA CCAGTTCGCC
GAAGCGATCG GGCCCTCGAC CCAGATCGTG TTCGACGCGG CCAACCGGAT CGACCTGCAG
GGGGTGACTA ACCTCACCCA GCTCGAAGGC CTGATCGAGG TGATCTGA
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| Protein sequence | MVPVFEIPQK EIPMTTYNVR GIAVTYDAFV GSDLPINLGS AILQLTGSDG ATFSYELGTP
PEPGAPPRAV LDTSEIIGAR LSGEPLDSEE EFILNLRWRD GPITRETTVL VLYVEDSPEF
GVDTDYIFYL GGAPLPELRT VQDWEAFDDT ILSIAPPTSG PFAPGADIVI EDLPSLLGPT
KTFTLQGTMI VYDDNVGFGE ADDVIPAEVV FTAPEDAVFS YTVEETGDPD TPFILTLDSG
QILGAIFNGN PDIEIAGELF LDVTWQDAGN VTRETTVLAL FGFDPDNFFV SFDYIFYLDG
HPLPDFQTVQ DWEDFDDSVT AVDVPSSGPF APETDIALAD LFGVVVADAP GNIILGTEGD
DNSDLPPGED IFGTDLDDDI RALAGDDFIN VSFGFDLIDG GTGFDVMNYE GSGPVFVNNT
GATVIDDWNG EEAEVGPFQV LKGFGGFEGV DGLTDIEAFE LSQFHDVAYL GDNADGLTFA
YDLAGDDKVV AAQSGLTATT FIAGSGNDMF IGSSNPFDFL DYGEQAEDDD DAAGPAFRGI
FVEFTGGGNG TATDPWDGFD MFEGIEFVGG TRFQDIFVGD ETDNIFHGEG GDDIFIGGAG
NDFIDGGPGE TEDDEDFDTL IYANETGEAG IFADMGTGLI VDTFGDTDTV VSIDRVIGTM
DEDVFVGSDF QDFIQYVGLA GEDVFFAGAA YETLRYREDD DFGALHGVYV DLAANFAIDG
FGDEDTIITD DGEIDRVRGS DFNDVLATSN VGARLEGEDG DDFLKGRLGE DRLEGDAGND
TILAGAGDDQ LSDGRGFDYL NGGAGWDLFF RDIGQDFEDF SWTPVVDLTE GKFFDPSEDP
ALFDILENIE AVSLEGNFNM TLIGDDGDNF LESDAGNDLL EGNGGDDELD GGDGDDTLNG
GDGNDLLFGG EGNDGLYGDA GDDELYGEAG DDTLEGGDGD DYLNGGGGND VINGGDGDDF
IDIGGSGVAT VDGGEGWDTY FVDLTGFNPG DFIYELNLIT GYAGVFGNPF NSDFVADVEE
ILVEGDLETR LTGTNEREIF NGGDGNDEIT GNGGDDELIG NDGNDTLIGG DGRDFLAGGD
GDDTLDASTG AASTQGFGDY IRAGLGSNTI IGHAALFAAG EGIDISYADL AGIGGVTITV
GANGTGTTVS GTPGQVDDTF TFAHYFEGSR DGDTFTGSNN ADFEGWVGLD GADDFDGGGG
FDVLFYDTDE AYGGAGGIIA TFADGAGTVE DSWGNLDTFT DIDEIVGSQS DDVMEATGST
GVRFDGEDGD DLLIGTDADD VLRGGDGDDE IHAGLGTDEI DGGEGSDTLV TDVTGLGPDQ
ITVDLDPLAG SQTIAGEGPG AADTLVGTEN FTLTGDWDAT VIGSDAANII TTGGGADDIT
TGLGRDTVNA GAGDDVIDAS AGDLASEGFG DRIRPGLGSD TVLGSATLYA QGGGINLAYF
DVSGVSGLTI TVGVNGSGTV VSGTAGLVND SFTFADVFGG SQDDDVITGT DRAEYEGFQG
YGGNDVIDGR GGFDEVYYLN ASGAVQINLQ NGSVTGADGT DTLLNIESIF ASHHDDTIQG
STARDQVNGG DGDDDINARG GFDLIDGGAG NDTINGGVGS DVLNGDGGND TIIAGDGFDE
VDGGAGDDLL KGNAGNDFIA GGAGADRIEG GIGRDMLHGG DDDDDISGAE GFDEIFGDAG
DDLLRGNAGN DTIEGGAGDD RIEGGIGADT LRGGVGNDEI VASEGFDALF GEDGDDTLLG
NAGNDLLEGG AGMDALFGGQ GADTLRGGDG DDILRGETGA DTLIGGVGDD ELRGGQGGDR
LSGGAGNDIL VGGSGADVFV FEGGVDTITD MSLIVDRIEI DGDALGIAGL TGAQVLDQFA
EAIGPSTQIV FDAANRIDLQ GVTNLTQLEG LIEVI
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