Gene Dshi_3797 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_3797 
Symbol 
ID5714326 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009956 
Strand
Start bp5736 
End bp6419 
Gene Length684 bp 
Protein Length227 aa 
Translation table11 
GC content74% 
IMG OID641276712 
ProductAsp/Glu racemase 
Protein accessionYP_001542008 
Protein GI159046337 
COG category[E] Amino acid transport and metabolism 
COG ID[COG4126] Hydantoin racemase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.175328 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones39 
Fosmid unclonability p-value0.366976 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGATGC GTCTTGCCAT ACTGAACCCG AACGCGACCC GGACCATGAC CGACGACATG 
GTCACCGCCG CGCGCGCCGC CGTCCCGACC GATGTGGAGG TCGTGGGCTA CACCAACCTG
GCCGGGCCGC CGGCGATCCA GGGGGCGGAG GATGCGCTCG CCTGCCTGCC GGGTCTTTTC
GCGCTGTATG ACACGGCCCT GGCCGAAGGG GCCACGGGGG TCGTGGTGGG CTGTTTCGAC
GATACCGGGT TGGCGGAGTT GCGGGCGCGC TGCGCCGGGC CGATCGCCGG GCTGGGGGAG
GCGGGCTGCC TCGCGGCAAG CCTGCACCGG GCGGAATTCG CGGTGCTGAC CACGACCGAG
GGCTCGGTGC CGGTGATCGC GGACAATATC GACCTGATGG GTCTGGCGCC GCGCTGCCGG
GGCGTCGTGG CCGCGGGCGT GCCGGTTCTG GGCCTCGCCG CCGGTCTGCC GCAGTTGCGC
GCCACGCTCG CCGGGCTGCT GGAGACCGCG CCGGAGGCGG CGGTCGTGCT GGGCTGCGCA
GGGATGTCGC CCCTGGCCGG GCAGATCGCC GAGGGCGTGG ACGTGCCAAT CATCGACCCG
GTTCTGGCGG CCACGGCGCT GGTCCTGTCG GCGGCCCGGG CCGCGCAGCG CGACCCGGCG
ACGAGCCTGG AGCGGAGCGC CTAG
 
Protein sequence
MKMRLAILNP NATRTMTDDM VTAARAAVPT DVEVVGYTNL AGPPAIQGAE DALACLPGLF 
ALYDTALAEG ATGVVVGCFD DTGLAELRAR CAGPIAGLGE AGCLAASLHR AEFAVLTTTE
GSVPVIADNI DLMGLAPRCR GVVAAGVPVL GLAAGLPQLR ATLAGLLETA PEAAVVLGCA
GMSPLAGQIA EGVDVPIIDP VLAATALVLS AARAAQRDPA TSLERSA