Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_3768 |
Symbol | |
ID | 5714297 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009955 |
Strand | - |
Start bp | 168764 |
End bp | 169426 |
Gene Length | 663 bp |
Protein Length | 220 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 641276683 |
Product | SNARE associated Golgi protein |
Protein accession | YP_001541979 |
Protein GI | 159046307 |
COG category | [S] Function unknown |
COG ID | [COG0398] Uncharacterized conserved protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.543637 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGATGC GCATCCTTCT TATTGCGGTG TTCCTGATGG GAGTCGTCGC ATTGGCCTTC CCGGACGTCC TTGGCGTTGA CATTCGCCTG CCTGATCGCG CGGAAATTGA CCGCTGGATC GAGGCGGCAG GTCTTGCCGG ACCAATGGTT ATCGTGGCGC TTATGACAAT CGCTATCGTC GCAAGCCCCC TGCCCTCGGC GCCGATCGCA CTCGCCGCCG GAGCGGCTTA TGGGCACACG TTCGGGACAC TCTTTGTCGT TCTTGGCGCG GAACTCGGTG CGCTTGCCGC TTTTGGTCTG GCCCGCGGTC TCGGTCGTCC CTTCGTTGAG CGTCATCTCG GTCAGAAGAT TAACACAGGC CTGTTCGGAT CGCAGAACAC TCTGACCTTC TTGGTCTTCG GCAGTCGCCT GCTGCCGTTT CTGTCCTTCG ATATGATCAG TTACGCCGCA GGTCTGAGCA AGCTGCATCT TTGGAGGTTC GCGCTGGCCA CGATGGCCGG GATTATTCCA GCGAGTTTTT TGCTCGCTCA CATGGGCAAC CAGGCGATGA ACGGAGATGC CCGCACTGCC ACATGGACCG CGCTTGCGCT CGGTGGCTTT ACCGGCCTGT CGGTTCTCTT CGCCGCGACG CGAAAGACCG GTACACAAGG GGAGGAGAGC TGA
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Protein sequence | MMMRILLIAV FLMGVVALAF PDVLGVDIRL PDRAEIDRWI EAAGLAGPMV IVALMTIAIV ASPLPSAPIA LAAGAAYGHT FGTLFVVLGA ELGALAAFGL ARGLGRPFVE RHLGQKINTG LFGSQNTLTF LVFGSRLLPF LSFDMISYAA GLSKLHLWRF ALATMAGIIP ASFLLAHMGN QAMNGDARTA TWTALALGGF TGLSVLFAAT RKTGTQGEES
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