| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3643 |
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| Symbol | |
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| ID | 5714173 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009955 |
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| Strand | + |
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| Start bp | 42877 |
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| End bp | 44031 |
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| Gene Length | 1155 bp |
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| Protein Length | 384 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641276561 |
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| Product | lytic transglycosylase catalytic |
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| Protein accession | YP_001541857 |
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| Protein GI | 159046185 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0752757 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAAGTGTA GGCTGCGTCA TATCCTGGCC CTTTGCCTGC TGCCTGGCGC CGCCTTTTCC
CAAGGTGTGC CGACCAATGA CAGCGGGTTG ACCGCGCGCG ATATCGTCGA GACCGGCGAT
CGAGAGGCCG ACCTCGCCAT TCAAGCGGAC AAGCTCTCGG TGCGAGAACT CATCGCCGAA
ATCGAACGGG AGCAATTGGC CACCCTGCAG CGCATCCTCG ATGCCCAGAG CAGCTTCGGC
GGTCAGGGCC TGCCGGCCAT GGTCTCCGGG CTGGAAAGTG GCAGCGGCGA TCCCGACCGC
GCCGTGGAAG CCGTCTATGG CACGGGCGAG ATCGATCCCA ATCGCGGCGG TGCGCAGATG
TTCGGGGATG CGTCTGAGAA CATCGAGCAA CTCATCATCC GCGTCGCCCA GGAAACCAGC
GGCTTTGCCG GCGTTGGCCG CGCGGGCCTC TCCCCGGTTC AATGGCGCGC ACTCCTACAG
GCGCTCATCT GGCAGGAAAG CCGGTTTACC ATCGGCGCGC GCTCGCCGGT CGGCGCCTTT
GGCCTCACCC AGATCATGCC TGGGACGGCC AGCGATCTCG GCATCAACCC GGATTACTAT
GACAGCCCCT ACCTGCAGGT GCATGGCGGC GCGCGCTATC TCGCCACCCA GCTCAACACC
TTCGATGGCA ACATCATCAA CGCCCTCGCG GCCTATAATG CCGGCCCCGG CCGGGTCTTT
GAATATGGCG GGGTCCCACC TTTCCGCGAA ACCCAGCACT ACGTCCAGGT CATCCCCGAG
CGCTACAATC TCTATCTGAG CCGCATCGGC GGGATCGAAG CGCTCGGAAC GATCGATCCG
GCGCTTCTGG CCAATGCCAA CCTCTCGATC ACCGGGCATG GCGCGGCCTT CTATGGCAGC
AACTCCCCCG CTGCGATCAG GCAGGCCGCC CTGCGCATTG CGGATATCGT CGAGCGGATT
TCTGAGACGG AAGACATGCA GGAAAGCGTC GCGCTCAACA CCTATGCCCG CGCCGAACTC
GTGCGTCTCG TCGCCGCGCG TATTCGTCTT CAAGCGGCAC GGACCCGCGT GCTTTCGGCC
GAGGAATTGG CACAGGCCAG CGCCCGCATG GCCGAGGGCG CATTCATGGA ATTCACGATC
AGGGAGATAG ACTGA
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| Protein sequence | MKCRLRHILA LCLLPGAAFS QGVPTNDSGL TARDIVETGD READLAIQAD KLSVRELIAE
IEREQLATLQ RILDAQSSFG GQGLPAMVSG LESGSGDPDR AVEAVYGTGE IDPNRGGAQM
FGDASENIEQ LIIRVAQETS GFAGVGRAGL SPVQWRALLQ ALIWQESRFT IGARSPVGAF
GLTQIMPGTA SDLGINPDYY DSPYLQVHGG ARYLATQLNT FDGNIINALA AYNAGPGRVF
EYGGVPPFRE TQHYVQVIPE RYNLYLSRIG GIEALGTIDP ALLANANLSI TGHGAAFYGS
NSPAAIRQAA LRIADIVERI SETEDMQESV ALNTYARAEL VRLVAARIRL QAARTRVLSA
EELAQASARM AEGAFMEFTI REID
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