Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_3618 |
Symbol | |
ID | 5714148 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009955 |
Strand | - |
Start bp | 22417 |
End bp | 23043 |
Gene Length | 627 bp |
Protein Length | 208 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 641276536 |
Product | electron transport protein SCO1/SenC |
Protein accession | YP_001541832 |
Protein GI | 159046160 |
COG category | [R] General function prediction only |
COG ID | [COG1999] Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.0565663 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAACGTC GGCAGCTCCT TCTATACGGC GCAGCCGGTG CCGGCGTTCT TGGCCTGACG CTCTTCGTGG GCTGGTGGCG GGTGGACGGG CCCGGTGCGC CTGAACCAAA AGGGCAGCGG CCCCTGCCCC TATCGGCGAT GGAGTTCCGG CTGACCGACC ACGAGGAAAA TGAGGTAGGG CCTGGCAACC TGATCGGTCG TCCCACAATG GTGTTTTTCG GGTTCACCTA CTGCCCGGAC GTCTGCCCGA CGACCCTATC GGATATTTCC GGCTGGCTTG AGGAACTGGG CGACGAAGCA TCAGAGATGA ACGTGGTCTT CATCACGGTC GACCCGGAGC GGGACACGGT CGAGGCCATG GCCGAATATG TCGGCTATTT TCATCCGGTC ATTCGTGGCT GGACGGGGCC GGAAGACCAA ATTGCCCGCG CTGCAGAAGG GTTTCGTGCC TCATTTGAGC GCGTCCCGAC TGAGGGCGGC GGCTATACGA TGAACCATAC GGCAAGCGTA TTCCTGTTCG ATGCCGAGGG TGAGCTCGTC ACCATGATCG ACTATCACGA GCAAAGAGAA TTCGCGGTGC CGAAGATCCA GCGCGCACTG ACAGAAGACG TAGAGGGGGC AACATGA
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Protein sequence | MQRRQLLLYG AAGAGVLGLT LFVGWWRVDG PGAPEPKGQR PLPLSAMEFR LTDHEENEVG PGNLIGRPTM VFFGFTYCPD VCPTTLSDIS GWLEELGDEA SEMNVVFITV DPERDTVEAM AEYVGYFHPV IRGWTGPEDQ IARAAEGFRA SFERVPTEGG GYTMNHTASV FLFDAEGELV TMIDYHEQRE FAVPKIQRAL TEDVEGAT
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