| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_1657 |
|---|
| Symbol | |
|---|
| ID | 5709268 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caldivirga maquilingensis IC-167 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009954 |
|---|
| Strand | - |
|---|
| Start bp | 1732339 |
|---|
| End bp | 1733115 |
|---|
| Gene Length | 777 bp |
|---|
| Protein Length | 258 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641276165 |
|---|
| Product | ABC-2 type transporter |
|---|
| Protein accession | YP_001541470 |
|---|
| Protein GI | 159042218 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.0203159 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.000243184 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | GTGAGGCTCA CTGATAAGCT TAGCTTATTT TGGGCAATAA TGATTAATGA GTTTAAGATA
GTCTCAAGGG AACCTGGGGG ATTAGTAATA CTCATAATAA TGCCCTACCT AGTGGCGGGT
GGAATGGCAG CCATGGCGTC CTTCTTCACC AGGGTTAACG GTGTGGATTT CATTAGGCAA
TTCATAGGTT TTGAAATAAT AATGGTGTCA GTAATAATGG TTCAGACAGG GGCGAGATTC
CTTAATGAGG AGAGGAGTGG GGGGAGGCTT GAGGCACTTA TGGCTACCCC AGTAAGCATG
TATGTTGTGC TTTTCGCCAC ATCAATGGTA ATGGTGCTTG TCAACGTAGG GGCATACGTT
GTGGCTTCAT TACCCATAAT TTACAGTGCA TTCGGGTTAA GTGGGTTAAT TAGGTTAATA
CCATCCATGG TAATAGTCAT CATAGGGTTA ATGCCGCTTT ACGGCATTGG TCTTGCATTA
GCAGGGGTAG TGATTAGGAT TAGGGATGTG GATGCCTTAA TGAATGTAGT CACATCATTA
ATAACAGTGC TCTCGGGTGC AACGTACCCA TTATACGTAT TACCCAAGTG GGTTAACGCA
ATAGTTGTGG CTATGCCGAT GTATCAGCTT TACCAAACCA CTATAAGTGT AGTATTGGGT
AATGGATTAT CAGCACTAAT ATACGGTTTA GTAGCCTCAA CGGTGGCCTA CCTAATGCTT
GGGGTGTTCA CTTATGGTAG AATCGAGAGG AGCGTGCTTA AGAGCGGTAT TAGGTAA
|
|---|
| Protein sequence | MRLTDKLSLF WAIMINEFKI VSREPGGLVI LIIMPYLVAG GMAAMASFFT RVNGVDFIRQ
FIGFEIIMVS VIMVQTGARF LNEERSGGRL EALMATPVSM YVVLFATSMV MVLVNVGAYV
VASLPIIYSA FGLSGLIRLI PSMVIVIIGL MPLYGIGLAL AGVVIRIRDV DALMNVVTSL
ITVLSGATYP LYVLPKWVNA IVVAMPMYQL YQTTISVVLG NGLSALIYGL VASTVAYLML
GVFTYGRIER SVLKSGIR
|
|---|
| |