Gene Cmaq_1302 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCmaq_1302 
Symbol 
ID5708909 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCaldivirga maquilingensis IC-167 
KingdomArchaea 
Replicon accessionNC_009954 
Strand
Start bp1374968 
End bp1375738 
Gene Length771 bp 
Protein Length256 aa 
Translation table11 
GC content43% 
IMG OID641275809 
Producthypothetical protein 
Protein accessionYP_001541119 
Protein GI159041867 
COG category[S] Function unknown 
COG ID[COG4879] Uncharacterized protein conserved in archaea 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000684372 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value0.255642 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTTGAGG TTAAGGACCT GTATAAAGAG AGGGTTAACG TTGCTGTAGA GCTTTGGGAT 
AAGGTGCTTA GGGGGGAGGT GGTATCAAGG GGTGAGTTAA TTAACCTACT AACTAAGTAC
TATGATGAAC ACGATATTGA GCCGTTTAGG GGATTAAGTA AGATTGATAT TTACGATAAG
GAGTTAGCCA CAGTGTATGT TGTTGGGGTT TATGGAATGG GGCTTGTGAC TCAACGTGAG
GTTAAGGATA ACTACGGTTC AATATTTAAA GTGGAGTTAA TTTCAGATGA GGCCTACGGT
ATAATTAAGA ATTACAATGG TGAGGAGTCT AAATTAGCCT TAAGGAACCT AATAGAGGAT
AATCAAGCCC TCGGTGACTC ACTGGAGGAG AAGGTTTTCA GGGTGTATAG GCTGGTGTAC
ACTGGGGCTG TCCTAGGCTT CATGCCTGAG GACGATATTT CAAGAACCTA CAGGGTTCTC
TACGAGGTAT TTGAACCACT TAGGCAGAGG CTTGTTAACT ATGTTAAATT CTACATAGCC
ACTAAGATAG CTGAGGGCAT TGCCATAGGC CGCTTCAGCA ACCAGAATGA GGTTAGGATT
GAGAAGTACG CCTACTGCAT AAGGCTAGGC TTAGAGAAGT GTGCGCCGAA TAATAGGCTC
ATTCATGAGA TAGCCCTATC AGTATACAAG GTACCACCCA ATGTTGTTAA TAGGCTTGTA
CCATTGGTTA AGAGATCATC CAAGTCCTCC CTTATCCCTA AGGCTTATTA A
 
Protein sequence
MVEVKDLYKE RVNVAVELWD KVLRGEVVSR GELINLLTKY YDEHDIEPFR GLSKIDIYDK 
ELATVYVVGV YGMGLVTQRE VKDNYGSIFK VELISDEAYG IIKNYNGEES KLALRNLIED
NQALGDSLEE KVFRVYRLVY TGAVLGFMPE DDISRTYRVL YEVFEPLRQR LVNYVKFYIA
TKIAEGIAIG RFSNQNEVRI EKYAYCIRLG LEKCAPNNRL IHEIALSVYK VPPNVVNRLV
PLVKRSSKSS LIPKAY