Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cmaq_1244 |
Symbol | |
ID | 5709470 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Caldivirga maquilingensis IC-167 |
Kingdom | Archaea |
Replicon accession | NC_009954 |
Strand | - |
Start bp | 1314211 |
End bp | 1314897 |
Gene Length | 687 bp |
Protein Length | 228 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641275749 |
Product | deoxyribonuclease V |
Protein accession | YP_001541061 |
Protein GI | 159041809 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1515] Deoxyinosine 3'endonuclease (endonuclease V) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.0616034 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.00561497 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGTTAGGA GGATTATTAG TGAGAATTAC GTTAAGTCAA GGGTACCTAA GGGCTTTAAC CTTGAGGCTG CACGCATGGT TCAGAGGAGG CTGGCGTCAA TGGTTGTTAC CATGCCATTA ACGCAGTCTG TAGACCTCAT TACCGGTATT GATGTAGCCT ACAGGGGTAA TTACGCCTAC GCAGTGGCGG CAACCTACTC CATGAGGCTT AACCACATTA TTGAGTATGG GTGTTATGAG GGTGAGGTCA CTTTCCCATA CGTACCAACC CTACTATCCT TTAGGGAACT CTCACCAATG ATTAAAGCCT TCATGAGGCT TAAGGAAAGG CCCCATGTTG TGTTAATTGA TGGCCACGGT GTAGCCCACC CTTATAGGCT TGGTATAGCT GCGCACTTCG GTGTGGTAAT GGGTTTACCG ACTATTGGGG TTGCTAAATC ATTACTCTAC GGTGAGGTTA AGGAATCCCT CATAATTGAT CCAAGTAATG GGGAAGTCAT AGGCGGTGTG GTTAAATGCG GGAGGCATGA GGTTTACGTT AGCGTGGGTA ACATGATTAC GCTTGACAAT GCCTTAACAT TGGTTTCAAG ACTGTGCCTA AGGGATAGGA TGCCTGAACC AATACTGCAT GCTCACACGA TGGCTAATAA GGTTAAACAC AATGGCTGCG TTAATGCATT AGCCTGA
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Protein sequence | MVRRIISENY VKSRVPKGFN LEAARMVQRR LASMVVTMPL TQSVDLITGI DVAYRGNYAY AVAATYSMRL NHIIEYGCYE GEVTFPYVPT LLSFRELSPM IKAFMRLKER PHVVLIDGHG VAHPYRLGIA AHFGVVMGLP TIGVAKSLLY GEVKESLIID PSNGEVIGGV VKCGRHEVYV SVGNMITLDN ALTLVSRLCL RDRMPEPILH AHTMANKVKH NGCVNALA
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