| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_1233 |
|---|
| Symbol | |
|---|
| ID | 5709729 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caldivirga maquilingensis IC-167 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009954 |
|---|
| Strand | + |
|---|
| Start bp | 1302938 |
|---|
| End bp | 1303816 |
|---|
| Gene Length | 879 bp |
|---|
| Protein Length | 292 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641275737 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001541050 |
|---|
| Protein GI | 159041798 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.17311 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 0.434623 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCACTGT TAGATATTTT TAGTGGAGCA CTAGGTTATT TGTTCTGGCT CCTACTATTA
GTTGTATTGA TACAGCCATG GTTATCAATG AGGTCCATGC AGCATGCTAG GTTAAGGCTT
ATGGAGATTA TTGAGCGTAA GTATGGTTAT AGGGTGATAA CCATGATTCA TAGGCAGGAG
AAGGTTGGTT TTCTAGGCAT CCCAGTTTAC CGTTATATAG ATATTGAGGA CTCTGAGGCT
GTAATAAGGG CCATTAGAAC TACACCACCC AGCATGCCGA TAATGCTCAT ACTCCACACC
CCAGGGGGCC TTGTTTTAGC GGCATCGCAA ATAGCAAGGG CCCTTAAGTC GCATCCAGCT
AAGAAGATTG TAGTGGTTCC CCATTACGCC ATGAGTGGTG GTACTTTAAT TGCCTTAGCT
GCTGATGAAA TAGTAATGGA TCAAAACGCA GTGCTTGGGC CACTGGATCC TCAATTAGGG
GGACCTGGTG GTGTGTATTA CCCGGCTCCA TCAATACTAA GGGCTGTTGA GGTTAAGGGT
AGGGATAAGG TTGATGATGA AACCCTAATA CTAGCTGATG TTGCTGAGAA ATCCCTAAGG
CAGGTTAAGG AGTTGGTTAT GGAGTTGCTG AGGGGGAAGG TTAATGATGA GAGGGTTGAG
GAGATTGCGG ATAAGCTTGT GGGCGGTTAC TACACTCATG ATTACCCCAT AACTGTTGAG
CAGCTTAAGG AAATGGGGTT CAAGGTATCC ACTAACGTAC CACCGGAGGT TTATGAACTA
ATGGACCTGT ATCCACAGGC GAGAACAAAT AGGCCAGGTA TAGAGTACTT ACCATACCCA
ACAGTACCTA GGTTCGCGCC GAGTGAAAGA AGAGAGTGA
|
|---|
| Protein sequence | MSLLDIFSGA LGYLFWLLLL VVLIQPWLSM RSMQHARLRL MEIIERKYGY RVITMIHRQE
KVGFLGIPVY RYIDIEDSEA VIRAIRTTPP SMPIMLILHT PGGLVLAASQ IARALKSHPA
KKIVVVPHYA MSGGTLIALA ADEIVMDQNA VLGPLDPQLG GPGGVYYPAP SILRAVEVKG
RDKVDDETLI LADVAEKSLR QVKELVMELL RGKVNDERVE EIADKLVGGY YTHDYPITVE
QLKEMGFKVS TNVPPEVYEL MDLYPQARTN RPGIEYLPYP TVPRFAPSER RE
|
|---|
| |