Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cmaq_0175 |
Symbol | |
ID | 5708721 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Caldivirga maquilingensis IC-167 |
Kingdom | Archaea |
Replicon accession | NC_009954 |
Strand | - |
Start bp | 207595 |
End bp | 209547 |
Gene Length | 1953 bp |
Protein Length | 650 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 641274678 |
Product | hypothetical protein |
Protein accession | YP_001540014 |
Protein GI | 159040762 |
COG category | [K] Transcription |
COG ID | [COG1293] Predicted RNA-binding protein homologous to eukaryotic snRNP |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 0.432348 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGCCTAAGC CTGTGCCCGT TAAGAAGACC CTTAATGCGC TTGACTTAGT GGCCATAGCG GTTGAGCTTA ACGCCACGTT GAGTGGTGGG AGGTTGATTA GGGTTTATAG GCTTGGTGAC TCGCATTACT TTAAGATTAG GGCATCTGAT GTAGCCTACC TTATCGCTAA CCCAAGGAGG ATTAGTCGAA CCTGGAGGAT ACCTCAAGGC TTATCCCCCA GTCCCCTTAG GAGGTTTATT GAGGACTGCG TGATAAATAG GTTTGAGGCT AACTTAGATA GGGTGATGAG TATTGACTTA AACTGCGGTA GACTCACCAT TGAATTAATA CCACCCTTCA ACATGGTGTT CACTGTTGAT GGTAAGGTTA AGTGGCTTCT ACACGAGTAC AGGGGTAAGG ATAGGGAGGT TAAGGTTGGA TCAACCTACA TTGAACCCCC GAGGAGGTTC CTGGATCCAA GGTTCTTCGA TAATCTACTT AAGCTCATTG AGGATTCAGG CTTAAGTGAT GAAGCCTTAG CTAAGGGTCT TGGGTTAGGT ACTGATTGGG CCAGGGAGGT TTGCACCAGG TCTGGGTGCA GTGACCCGGT TCTAGTATGG GGAAGTATTA GGGGTATTCT TGAGGTTCTT CACTTAGGTA GGCTTAAGCC AGTCATATAT GCTTCACCAT CATACGTATC CCCCATACCC CTTAGCTCAA TTAAGGGTGA GTTCAAGGAG GTTGAGAGCT TCAATAAGGC TGTTGACGAT TACTTCACCT CAATTGAGGT TGAGAGGGTT GCTGAGGAGA GGGTTAAGGG TATTGAGGAT GAGATTGCTA GGCTTGAGTC ATCCATTAAG GAACTTGAGG ACACCGTGGG TGGTTACTTA AGGGAGGCTG AGAACCTTAG GAGGAGGGGT GAGTTAATCA TGGGTAGGCT CTATGAGTTT AGTGAGCTTC ATGAGGCGCT GCTGCGCGCC TACATGGCTG ATAAGGATTC CTTCAAGGCT AAGGTTAAGG GTATTGAGTA TGGTGGCATT AAGGTGATTG ATTATGATCC ATTGAGGAAG ACAGTGAAGG TTACGGTGAA TAATAATGAG GTTGAGTTAA CATTGGGGGA GAGTCCTGGG GAGACGGCGG CCAAGTACTT TGAGGAGGCT AAGAGACTGG AGAAGAAGGC TAAGGCGGCT GAGGCTAAGT TAACGGAATT AAGGGGTAAG GTGAATGAAT TAAGGAGTAG GGTTAATGAA GCCACTGAGG AGACTAGGGC GGCAGTTAGA TTCGTGGCCA GTAGGGAGTG GTTTGAGAGG TTTAGGTGGT TCATAACCAG TGGTGGTTCA CCGGTCCTAG CTGGTAAGGA TGCTGGGCAG AATGAGGCCA TTGTTAAGAG GTACATGAAT CCATGGGACC TCTTTCTTCA CGCTGATGTT CAAGGAGGCC CAGTGACGGT GATTAAGGTT ACTAGGGGCC AGGAGGTTAA GCAACAGGAC TTAATTGAGG CTGCTCAATA CGCCGCAGCC TACTCCAAGG CTTGGAAGCT TGGGGCTAAT TCAATAGACG TCTACTACGT TAAGGGTGAG CAGGTTAGTA AGAAGGCGCC CAGTGGCGAG TACTTGTCTA AGGGTGGATT CATGATATAT GGACAGAGGG GGTGGGTTAG GGGTGTTGAG TTAATTATTA GTGTGGGTTT AAGGATTGAC GGTGACGTGA TTAGGCTAGT ATCAGCACCA CCAACAGCCA TGGGTTCACT GGCGAATTAC TACATTACCC TTAAGCCAGG TAACAGTGAG AGGAGTGAGG TTGCTGGTAG GATTAGGGAA TTATTCATTA AGAGGTATCC TGAGGCTAGG CAAATACCTG TGGATCATAT TATTGAGCAT GTGCCAGGGC CATCAGTGGT AATTGAGTCT AATGAAGGTA ACCCAATCAC CTGGGATACT GTTAAGGGGA TTTTCAATAA GGTTGCTGGT TAA
|
Protein sequence | MPKPVPVKKT LNALDLVAIA VELNATLSGG RLIRVYRLGD SHYFKIRASD VAYLIANPRR ISRTWRIPQG LSPSPLRRFI EDCVINRFEA NLDRVMSIDL NCGRLTIELI PPFNMVFTVD GKVKWLLHEY RGKDREVKVG STYIEPPRRF LDPRFFDNLL KLIEDSGLSD EALAKGLGLG TDWAREVCTR SGCSDPVLVW GSIRGILEVL HLGRLKPVIY ASPSYVSPIP LSSIKGEFKE VESFNKAVDD YFTSIEVERV AEERVKGIED EIARLESSIK ELEDTVGGYL REAENLRRRG ELIMGRLYEF SELHEALLRA YMADKDSFKA KVKGIEYGGI KVIDYDPLRK TVKVTVNNNE VELTLGESPG ETAAKYFEEA KRLEKKAKAA EAKLTELRGK VNELRSRVNE ATEETRAAVR FVASREWFER FRWFITSGGS PVLAGKDAGQ NEAIVKRYMN PWDLFLHADV QGGPVTVIKV TRGQEVKQQD LIEAAQYAAA YSKAWKLGAN SIDVYYVKGE QVSKKAPSGE YLSKGGFMIY GQRGWVRGVE LIISVGLRID GDVIRLVSAP PTAMGSLANY YITLKPGNSE RSEVAGRIRE LFIKRYPEAR QIPVDHIIEH VPGPSVVIES NEGNPITWDT VKGIFNKVAG
|
| |