| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_0074 |
|---|
| Symbol | |
|---|
| ID | 5710186 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caldivirga maquilingensis IC-167 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009954 |
|---|
| Strand | - |
|---|
| Start bp | 87718 |
|---|
| End bp | 88905 |
|---|
| Gene Length | 1188 bp |
|---|
| Protein Length | 395 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641274577 |
|---|
| Product | mandelate racemase/muconate lactonizing protein |
|---|
| Protein accession | YP_001539918 |
|---|
| Protein GI | 159040666 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[R] General function prediction only |
|---|
| COG ID | [COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGGAGA TAAGTGAAGT GGAGCCTATA ATACTATATA ACCCTAGGCC TGATGACCCA
GCGCCTTGGG CGTCATATAT GGTTTTAGTT AGGGTTGTTA CTAAGGATGG TGGAGTTGGT
TGGGGGGAAA CTCTTAGTTC GATTAGAGTT AATGCATTGG TTCAATTAAT TAAGGTATTA
TCCAGTGTCA TGAGGGGTAG GGATGTGTTT AACCTTGAGG GTAATAGGCT TGAGTGGTAT
AGACAGGACT TCAATATGCC TGTTTCCCTA GAGTCCACAG CCGCCTATAG TGCTTTTGAT
ATTGCTTCAT GGGACATAAT AGGTAGGGAG CTTGGTGCAC CGGTGCATAG GTTGCTTGGG
GGCTTAACTA GGGATAGGGT TAGGGTTTAT GCTAATGGCT GGTATTCAAA TGCAGTTAAG
CCTGAGGATT TCGCTGAGAA GGCTAAGGAG ACTGTTAGGA GGGGTTATAC GGCTCTTAAA
TTCGACCCCT TTGGCCCATA CTTCGACATG ATTGATTCGG CAGGCATTAA GGATGCCGCT
GAGAGGGTTA AGGCTGTTAG GGAGGCTGTT GGTGATGGAG TGGACATACT CATTGAAGCC
CACGGTAGGT TTAACGCTGA GTCAGCAATT AGGGCAGCGT GGGCTTTGGA GCCCTATAAC
CCATTATTCA TGGAAGAGCC CGTTCACCCA GAGGATATTG AGGGCTTAAT TAGGTTTAGG
AACAGTACTA GAATTAGGGT TGCCTTAGGT GAACGCATAA TTAATAAGGG ATACTTAATT
CAATACCTTA AACTCAGCCT TGTTGATTAC CTACAGACTG ATGTGGGCAG ATTCGGTGGC
CTAACTGAAG CTAGAAAGGC ATCAATAATG GCTGAAGCCT TCAGTGTACC CATGGCATTT
CACAACGCTA ACGGCCCAAT ACTCCACGCA GCCACAATAC AGCTTGATGC ATCAATACCC
AACTTCGCCG TTCAGGAATC ATTCTACGAT TACTGGCCCC AGTGGAAGAG GGATCTTGTG
GGTGACTCAA TGCCTGTGGA GAATGGTTAC GTTAAGGTTC CCACTAAGCC TGGTTTAGGG
GTTGATGTTA ATGAGAAGCT TATTGAGAGG CTTAGGATTA ATGAGACTGA GATTACCATT
AAGGGTGGTT TATCGTGGAT TGTTAAGGGG ACCACTGGTG GCTCCTAG
|
|---|
| Protein sequence | MPEISEVEPI ILYNPRPDDP APWASYMVLV RVVTKDGGVG WGETLSSIRV NALVQLIKVL
SSVMRGRDVF NLEGNRLEWY RQDFNMPVSL ESTAAYSAFD IASWDIIGRE LGAPVHRLLG
GLTRDRVRVY ANGWYSNAVK PEDFAEKAKE TVRRGYTALK FDPFGPYFDM IDSAGIKDAA
ERVKAVREAV GDGVDILIEA HGRFNAESAI RAAWALEPYN PLFMEEPVHP EDIEGLIRFR
NSTRIRVALG ERIINKGYLI QYLKLSLVDY LQTDVGRFGG LTEARKASIM AEAFSVPMAF
HNANGPILHA ATIQLDASIP NFAVQESFYD YWPQWKRDLV GDSMPVENGY VKVPTKPGLG
VDVNEKLIER LRINETEITI KGGLSWIVKG TTGGS
|
|---|
| |