Gene Cmaq_0042 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCmaq_0042 
Symbol 
ID5709359 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCaldivirga maquilingensis IC-167 
KingdomArchaea 
Replicon accessionNC_009954 
Strand
Start bp57724 
End bp58605 
Gene Length882 bp 
Protein Length293 aa 
Translation table11 
GC content44% 
IMG OID641274545 
Productproliferating cell nuclear antigen 
Protein accessionYP_001539886 
Protein GI159040634 
COG category[L] Replication, recombination and repair 
COG ID[COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) 
TIGRFAM ID[TIGR00590] proliferating cell nuclear antigen (pcna) 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.512471 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones53 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTGAGG AGAACGAGGA GGAGAGGAGG GAAGAGGAAG CTGAGACTGA GGAGGCAGAG 
GGTGAGACTG GGGGTGGTTC AATAGTTCAG GAGAGTGGGG AAAGTGGGGT TGTTTACACA
TTTACGTTTC CTAAGGGTAG GGATGTTAGG TATGTTTTCC TAAGTCTGGC TCAAGTTCTA
AATGAGGCTT TATTCGTCAT GAGTCCTGAT GGTATTAGCC TCAAGGCTAT TGATTCATCT
AAGGTTTCCC TAGTGCTCCT TAACATACCT TCAACAGCCC TTGAGGAAGT TAACATAACT
GACACTGTTA AGGTTGGTGT TCTATTTGAT ACCATTAAGA AGCTGGCTAA GAGAATTAGG
GCTAAGGATA AAGTTGACAT AGGTGTTGAT AAGGGGAGGA ACAGGTTCCT AATGATAATA
TACTATGGTT CTAAGGGGCG GGAAAGCGGT ATGTATAGGA AATTCTACTT ACCGATTGTT
GATGTTACTC AGGAGGAGAT ACCGGAGCCG AAGATTGATT ACCCTGTTAG GATACGGATG
AGCATGGATG CATTCAAGGA TGCCTTAACA ATGGCTGAGG ACATAAGTGA CGCAGTCACA
TTCACCGTTG ACCCAGAGTC ATTCACCATA AAGGCCTCCG GTGAGGGGGG TAGGTATTAT
GAGGTTCAGT ATCAAAGCAC TGATGAATCC TTCCAGGAAT TCTCAGTGAG TGAGAAGCAG
GAGGCGTCCT ATTCCCTTGA TTACATAATG AACATGAATA GGCAAATGGC CCCAATATGT
GAATACGTTA CCATAGAATT CGCCACTAAT AAACCCATTA AGTTAACCTA CGAGTTCGCG
TCAGGTTCAT TAACATACTA TGTAGCTCCA AGATCCCTGT AG
 
Protein sequence
MPEENEEERR EEEAETEEAE GETGGGSIVQ ESGESGVVYT FTFPKGRDVR YVFLSLAQVL 
NEALFVMSPD GISLKAIDSS KVSLVLLNIP STALEEVNIT DTVKVGVLFD TIKKLAKRIR
AKDKVDIGVD KGRNRFLMII YYGSKGRESG MYRKFYLPIV DVTQEEIPEP KIDYPVRIRM
SMDAFKDALT MAEDISDAVT FTVDPESFTI KASGEGGRYY EVQYQSTDES FQEFSVSEKQ
EASYSLDYIM NMNRQMAPIC EYVTIEFATN KPIKLTYEFA SGSLTYYVAP RSL