Gene Sare_5095 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSare_5095 
Symbol 
ID5704063 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalinispora arenicola CNS-205 
KingdomBacteria 
Replicon accessionNC_009953 
Strand
Start bp5769868 
End bp5770608 
Gene Length741 bp 
Protein Length246 aa 
Translation table11 
GC content75% 
IMG OID641274487 
ProductECF subfamily RNA polymerase sigma-24 factor 
Protein accessionYP_001539828 
Protein GI159040575 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000000320537 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCGACGA ACGGGTCGAT CGGGCGGCCG GTGGGCGACA ACAGCCCACC GGCGGCCGAC 
CCGCCATCCG ACCTCGACCT GCTGCGGGCA CACGTCGCCG GTGACCGGGA CGCCTTCGCC
GGGCTGTTCC ACCGGCACCG GGACCGCCTC TGGGCGGTCG CGCTCCGCAC TCTCGGCGAC
CGGGAGGAGG CAGCCGACGC GCTGCAGGAC GCGTTGCTTT CCGCCCATCG GGCCGCCGGG
CGGTTCCGGG GCGACTCTGC GGTGACCACC TGGCTTCACC GAATCGTGGT CAACGCCTGC
CTGGACCGGA TACGACGACG GCAGGCCCAC CCGACGGTGC CGCTGCCCGA CGGCGTCCGC
GACCACACGG GAGCGACCGG CGGCACGGAG CCGGCTGCTC CCGTGGCCGA CCATGACACC
GCCCTCGTGG TCCGGGAGGC ACTGGCGGCG CTGCCGGTCG AGCAGCGTGC CGCGCTGGTT
CTGGTTGACG TGCAGGGCTA CCCGGTAGCC GAGGTGGCCC GCATCCTGGA TGTCGCCGAG
GGGACGGTGA AGAGCCGGTG TGCCCGGGGC CGGGCCCGCC TGGCGGCGAC GCTCGGACAT
CTCCGAACGG CACCGGAGCA GGAGCAGCCG GCCTCGGGCG GCAGCGTGCC GGCCGTCACC
CGACGGAACC GGCAACCGCG TGGCAGCGTC CGATCAGGGT CGGGGCGGCC CCGGCGCGAC
GGCAACCAGG AGGACCTGTG A
 
Protein sequence
MATNGSIGRP VGDNSPPAAD PPSDLDLLRA HVAGDRDAFA GLFHRHRDRL WAVALRTLGD 
REEAADALQD ALLSAHRAAG RFRGDSAVTT WLHRIVVNAC LDRIRRRQAH PTVPLPDGVR
DHTGATGGTE PAAPVADHDT ALVVREALAA LPVEQRAALV LVDVQGYPVA EVARILDVAE
GTVKSRCARG RARLAATLGH LRTAPEQEQP ASGGSVPAVT RRNRQPRGSV RSGSGRPRRD
GNQEDL