Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sare_5060 |
Symbol | |
ID | 5705335 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salinispora arenicola CNS-205 |
Kingdom | Bacteria |
Replicon accession | NC_009953 |
Strand | + |
Start bp | 5728213 |
End bp | 5730729 |
Gene Length | 2517 bp |
Protein Length | 838 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641274453 |
Product | diguanylate cyclase/phosphodiesterase |
Protein accession | YP_001539794 |
Protein GI | 159040541 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.00347473 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGACCCAA ACACCAGGGA ACCGTTCGGG ACCGACAGGC GCCTGGCCGC GCTTGTCGGT CTCATCGTGA CGCCGGCAGC AGCTGTCATC GTCGCCGCCC TCCTGGAGAT CGTCCACCGG CCACCCCGCA CCGTGGCAGA CGCCGCGACC CTGATGACGA TCATCTTCAT GATCGCCGTG GGGATCATGG TCAAGGCGCG GATCCGGATC AGGTCGACCA CGCACTCCAT CACCTGGAAC GACGTGGCGA TCATCGTCGG CGTCGCGGTG GCACCGCTGC CCTGGGCGTT GATGTGCATT GTGGTCGGCG TGGCGGTGGC GTCGGCGATA CAGCGGCTTC CGCGGATAAA GAGCACCTTC AGTATCGGTA AGAACGTCCT CGTCGCCGCG GCGGCTGGAT GGGTCCTGAC ACTGTTCGGA TGGCCAGGAG AATCAGCCAC ATTCACGGAT GTTCTCGTAC CCGTCACCGT CGCCTACGTG GCCGCAGCGC TGGTGGACGA GGCCGCCACC ATCCCCGTGA TCGCGATTGC CTCCCGCACG AAGATTCGCC GGCGGTTCGT CGACAACTGG GATATTCGGC TCAGCGGTGC CGCCGTCCGC CTGGTGGTGA CGATAGGAAC GCTTTTCATC CTGCAGGTGG ACGCCCGCTT TCTGCTCGCC GTACCGCCCC TCGTGCTCAG CCTGCACCTC GCTCATTCCG CCCGGATCAA CACCCGCACG GAGCAGCGGG TCTGGCAGCG GCTTGCGCGC ACCACCGACG CGCTCAACGT CGTCGACCTC GACCAGGTCC TCACCACCGC CGTCGCCCAG GCCGCCGAAC TGTTCAGCGC CGACGAGGTC GAGATCGAAC TACGCGAGGG CGACCGGGCG GTACGAGGTG ACGGCGGTGG GATCACCTAC GACGGGCCGG TCAACGAAAA CGACGATCCG GTCACCATCA ACATGCTGAC CATCCCGCTG GAGGACCACG ACCAGACCGT GGACGTGGGA GTGCTCCGGC TACGGTTCCG TGAGCCGGTG CGGCTCTCCG AACGCGAGCA GTACACCCTG CGCACCTTCG CGTCGGCGCT GTGCACTGCC GTACGCAACG CGCAGGCGTA CGCGGAACTG GCCCGGGTCG CCGCCGAGCA CGCGTACGCC GCCACCCACG ACGCCCTCAC CGGGCTGGCG AACCGTCGGC GTCTCCTGGA CGAGGGCGCC GGAGGCCTCA GCGCCCGGCA TGCCGAGGGT GTCACCGCCC TCATGCTGGT CGACCTCGAT CACTTCAAGG AGGTCAACGA CACGCTCGGT CACGCCGCTG GGGATCAGGT CCTGATTCGG GTCGCGGACC GGCTGCGCGC CACCGCCCAA CCCACCGATC TGGTAGCCCG GCTGGGTGGC GACGAGTTCG CCGTCCTCCT GCGGGGCCTG CCCGCCCCGG CGGTGGCCAT GCACCGGGCG GAGATCCTGA TCGCCGCCCT GCGCGAACCG TTCGACCTCG ACGGCCTGCG GATCAGCGTC GAGGCGAGCA GTGGCGTCGC GGTGGCCCCG GCCACCGGCG GCATGGCCGA ACTACTCCGC CGTGCGGACG TCGCGATGTA CCAGGCCAAA CGGTTTGGCC AGCGCGTCTT CAGGTACGCG CCGAGCCGGG ACACCGCCGA CATCGCCCGA CTCACCCTCG GTGGAGACCT GCCCCGAGCC GTCGCCGACC ACGAGTTCAC CGTCACCTTC CAGCCGATCA TCGACCTCGG CACCGGCGCC GTGGCCGGCG CCGAGGCACT CGCCCGGTGG CACCACCCGA CCCACGGCGT GATCGACCCG CTACGGTTCC TCGAGGTGGT GGAGCGTTCC GGCCTGCTTC CCGCGTTCGC CGGAACGATC CTCGACCAGG CGCTCGTCGC GGCCGATAGC TGGCGGAAAG CCGGTTTCGA TGTGCCGGTC GCGGTGAACG TTTCGCCCCG CAGCCTGTTG GACCCCGACT TCCCCTGCTC GGTGCTGGCC CGCCTTCGCG CCCACGACCT CCCACCCGAC CGCCTTGTGC TGGAGCTGAC CGAGACCCTC ACCCTCAGTC AGCTCGACAT CGTTGACCAG GTGCTCGGCC GGCTCCGTGA CGAAGGGGTC CGGCTCGCTC TCGATGACTT CGGCACGGGC TACTCGTCAC TGTCGCTGCT CTCCCGCATC CTGGTCCACG AGCTGAAGAT CGACCGAAGC TTCGTCACGG ACATGGAGAG CTCACCGGAG GCCGCCGCCG TCATCCGCTC GACACTGGAT CTCGGCCGCA GCCTCGACCT GACCGTGATC GCCGAGGGCG TGGAGAACGA ACCGCAGCGT CGCGCCCTGT GGGAACTGGG CTGTACCGGC GGGCAAGGGT ACCTTTTCGC CCGGCCGATG CCCGCCGGCA CGTTGCTGGA GACGCTGCGT CGGGGCCCCG GTGGCCGGCC CGGCACACTC GCCGCACCGC TACACGACGC AGGTGCGGTC GTCCGCCTAC CCGCCGGACG TCGGCCCGGC CCCCGCGGTC GCCACCAGCC GGCCTGA
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Protein sequence | MDPNTREPFG TDRRLAALVG LIVTPAAAVI VAALLEIVHR PPRTVADAAT LMTIIFMIAV GIMVKARIRI RSTTHSITWN DVAIIVGVAV APLPWALMCI VVGVAVASAI QRLPRIKSTF SIGKNVLVAA AAGWVLTLFG WPGESATFTD VLVPVTVAYV AAALVDEAAT IPVIAIASRT KIRRRFVDNW DIRLSGAAVR LVVTIGTLFI LQVDARFLLA VPPLVLSLHL AHSARINTRT EQRVWQRLAR TTDALNVVDL DQVLTTAVAQ AAELFSADEV EIELREGDRA VRGDGGGITY DGPVNENDDP VTINMLTIPL EDHDQTVDVG VLRLRFREPV RLSEREQYTL RTFASALCTA VRNAQAYAEL ARVAAEHAYA ATHDALTGLA NRRRLLDEGA GGLSARHAEG VTALMLVDLD HFKEVNDTLG HAAGDQVLIR VADRLRATAQ PTDLVARLGG DEFAVLLRGL PAPAVAMHRA EILIAALREP FDLDGLRISV EASSGVAVAP ATGGMAELLR RADVAMYQAK RFGQRVFRYA PSRDTADIAR LTLGGDLPRA VADHEFTVTF QPIIDLGTGA VAGAEALARW HHPTHGVIDP LRFLEVVERS GLLPAFAGTI LDQALVAADS WRKAGFDVPV AVNVSPRSLL DPDFPCSVLA RLRAHDLPPD RLVLELTETL TLSQLDIVDQ VLGRLRDEGV RLALDDFGTG YSSLSLLSRI LVHELKIDRS FVTDMESSPE AAAVIRSTLD LGRSLDLTVI AEGVENEPQR RALWELGCTG GQGYLFARPM PAGTLLETLR RGPGGRPGTL AAPLHDAGAV VRLPAGRRPG PRGRHQPA
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