| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_5018 |
|---|
| Symbol | |
|---|
| ID | 5705473 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | + |
|---|
| Start bp | 5687137 |
|---|
| End bp | 5688810 |
|---|
| Gene Length | 1674 bp |
|---|
| Protein Length | 557 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641274411 |
|---|
| Product | SSS family solute/sodium (Na+) symporter |
|---|
| Protein accession | YP_001539752 |
|---|
| Protein GI | 159040499 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4147] Predicted symporter |
|---|
| TIGRFAM ID | [TIGR00813] transporter, SSS family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.0000399279 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACCACGG TCCTCGCGGC TGAGGCGGGC GACAACACCG CCCGGAACCT GACCATCACC
CTGTTCCTGG TCTTCGTGGC GGTGACGCTG GCGATCACGG TGTGGGCCAG CCGGCAGACC
AAGACCGCCA CCGACTTCTA CGCGGGTGGC AGGTCCTTCT CCGGCTTCCA GAACGGCATG
GCGATCGGCG GCGACTACAT GTCGGCGGCG TCGTTCCTCG GCATCGCCGG CCTCATCGCG
CTCTACGGCT ACGACGGCTT CCTCTACTCG ATCGGCTTCC TGGTCGCCTG GCTGGTGGCG
CTGCTGCTCG TCGCCGAGTT ACTGCGCAAC TCCGGCCGTT ACACGATGGC CGACGTGCTC
GCCTTCCGGA TGCGGCAACG TCCGGTGCGT ACGGCCGCCG CGGCCTCCAC CATCACAGTG
TCGATCTTCT ACCTGCTCGC TCAGATGGTC GGTGCGGGGG CACTGGTCGC TCTGCTGCTC
GGCATCAAGC CGGGCACGAC ATTGCTCGGC ATGGACGCGG ACGCCGCCAA GATCGCCACA
ATCATCATGG TTGGCGCGCT GATGGTCACC TACGTCACGG TGGGGGGCAT GAAGGGCACC
ACCTATGTGC AGATCGTCAA GGCGTTTCTG CTGATGGGGG GCGCCGTCGC GATGACGCTG
CTGGTGCTGG CGAAGTACAA GTTCAACCTC TCCAGCCTGC TCGGCGACGC GGCGGACGCC
TCCGGCAAGG GAGCCGCCTT CCTCGAACCG GGGCTCCGGT ACGGCGTCGA GACACCCGGT
GACGCCCTGA AGACCTTCTA CAGCAAGCTC GATCTGCTCT CTCTCGGCAT CGCGCTGGTG
CTCGGCACGG CCGGCCTGCC GCACATCCTC ATCCGCTTCT ACACCGTGCC CACGGCGAAA
GCCGCCCGGA AGAGTGTCCT CTGGGCGATC GGCATCATCG GCACCTTCTA CCTACTCACC
CTGGCCCTGG GCTTCGGCGC CGCAGCACTC GTGGGAGGCG AGGCGATCAC TGCGCAGGAC
CGGGCTGGTA ATACCGCCGC GCCGCAGCTC GCCGAGGCGC TGGGGATGGA CTTTCTCGGG
GGCGACCTGG GCGGGGCGAC CCTGCTGGCG GTCATCGCGG CGGTCGCCTT CGCGACCATC
CTGGCGGTGG TCGCCGGCCT GACCCTGGCC TCCTCGTCCA GCCTGGCGCA CGACTTCTAT
GCCAACGTCG TCAAGGACGG GGCCGCCTCC GAACGCCAAG AGGTGGCGGT GGCGCGAATC
TCCGCCCTGG TGATCGGCGC GATCTCGATC GTCCTCGCCA TCTTCGCGCA GAACCTGAAC
GTCGCCTTCC TGGTCGCGCT CGCCTTCGCG GTAGCTGCGT CGGGCAATCT GCCGGCGATC
CTCTACAGCC TGTTCTGGCG GCGGTTCAAC ACCAACGGCG CGGTCTGGGC TATCTACGGC
GGCCTCTTCG CCGCGGTCTT CCTGGTGTTC TTCTCCCCGG TCGTCTCCGG GTCGCCGACC
GCGATGTTCC CCGACCAGGA CTGGCAGTGG TTCCCGCTGT CCAATCCGGG CCTGCTCTCC
ATCCCGTTCG GCTTCCTCTG CGGCTGGATC GGAACGGTGA TCTCCAGGGA ACGCGACGAA
CAGCGGTACG CCGAACTGGA GGTGCGCTCA CTTACCGGCG CGGGCGCGCA CTGA
|
|---|
| Protein sequence | MTTVLAAEAG DNTARNLTIT LFLVFVAVTL AITVWASRQT KTATDFYAGG RSFSGFQNGM
AIGGDYMSAA SFLGIAGLIA LYGYDGFLYS IGFLVAWLVA LLLVAELLRN SGRYTMADVL
AFRMRQRPVR TAAAASTITV SIFYLLAQMV GAGALVALLL GIKPGTTLLG MDADAAKIAT
IIMVGALMVT YVTVGGMKGT TYVQIVKAFL LMGGAVAMTL LVLAKYKFNL SSLLGDAADA
SGKGAAFLEP GLRYGVETPG DALKTFYSKL DLLSLGIALV LGTAGLPHIL IRFYTVPTAK
AARKSVLWAI GIIGTFYLLT LALGFGAAAL VGGEAITAQD RAGNTAAPQL AEALGMDFLG
GDLGGATLLA VIAAVAFATI LAVVAGLTLA SSSSLAHDFY ANVVKDGAAS ERQEVAVARI
SALVIGAISI VLAIFAQNLN VAFLVALAFA VAASGNLPAI LYSLFWRRFN TNGAVWAIYG
GLFAAVFLVF FSPVVSGSPT AMFPDQDWQW FPLSNPGLLS IPFGFLCGWI GTVISRERDE
QRYAELEVRS LTGAGAH
|
|---|
| |