Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sare_4995 |
Symbol | |
ID | 5705735 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salinispora arenicola CNS-205 |
Kingdom | Bacteria |
Replicon accession | NC_009953 |
Strand | - |
Start bp | 5664085 |
End bp | 5664996 |
Gene Length | 912 bp |
Protein Length | 303 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641274388 |
Product | rhomboid family protein |
Protein accession | YP_001539729 |
Protein GI | 159040476 |
COG category | [R] General function prediction only |
COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.295556 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.00000450745 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | GTGAGCGAGT CGCCACCGAC CACCCCGGTC TGCTACCGCC ACCCCGGCCG GGAGGCGTAC ATCCGGTGCA ACCGTTGTGA CCGGGTCATC TGCCCGGACT GCATGCGCGA GGCATCGGTG GGCTTCCAGT GCCCGGAGTG TGTCAACGAA GGGCGCCGTA GCGTGCGGCC GACGCGCACC GCCTTCGGTG GTGGTGTCGT CGGCCAACAC GGCTATGTCA CCAAGGCGTT GATCGCGTTC AACGCCCTGG TGATGCTGCT CTCCATCAGC ACTGACCGGG GCGGCGACGC GGTGGTGGGG GGATCCGGCT TCGGCGGGCT GCTCGGCGGT GCCACCCCGT TGACCGAGTG GGGTGCGGTG CTCGGGCTCG CGGTCCTTCC CGACGGCACC GTGGGTGGCA TCGCCGAGGG CGAGTGGTAC CGCCTGATCA CCGCGATGTT CCTGCACTAC GGCGTGATCC ACCTGCTGCT GAACATGTAC GCGCTGTGGA TCCTCGGCCG GAATCTGGAA GCGAGTCTCG GCCCCGCCCG GTTCTTGGCC CTCTATCTGA TCTCCGGCCT CGGTGGAAAC GTCGCGGCCT ACCTGATCAG CGCGCCGAAC GCGGCGACCG CGGGCGCGTC CACGGCCATC TTCGGACTCT TTGCGGCCCT GTTCGTCGTC GGTCGGCGAT TGGGGCGCGA TGTCTCCCAG GTCCTCCCGA TCCTGGTGAT CAACTTGGTC TTCACGCTGA CCGTACCGGG AATTTCTATC CCCGGTCACC TGGGCGGACT CGTGCTCGGT GCCCTGATGG CCGTCATCCT CGCGTACGCC CCGCGGTCGC GGCGCACGCT GGTGCAGGTG GCCGGTGGGA CGGTGCTCGT GGCGGCGCTG CTCGGCCTGG CCCTGATCCG GACCGCGGCC CTGCTCGCCT GA
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Protein sequence | MSESPPTTPV CYRHPGREAY IRCNRCDRVI CPDCMREASV GFQCPECVNE GRRSVRPTRT AFGGGVVGQH GYVTKALIAF NALVMLLSIS TDRGGDAVVG GSGFGGLLGG ATPLTEWGAV LGLAVLPDGT VGGIAEGEWY RLITAMFLHY GVIHLLLNMY ALWILGRNLE ASLGPARFLA LYLISGLGGN VAAYLISAPN AATAGASTAI FGLFAALFVV GRRLGRDVSQ VLPILVINLV FTLTVPGISI PGHLGGLVLG ALMAVILAYA PRSRRTLVQV AGGTVLVAAL LGLALIRTAA LLA
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