| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_4589 |
|---|
| Symbol | |
|---|
| ID | 5705178 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | + |
|---|
| Start bp | 5208561 |
|---|
| End bp | 5209274 |
|---|
| Gene Length | 714 bp |
|---|
| Protein Length | 237 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641273997 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001539344 |
|---|
| Protein GI | 159040091 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4221] Short-chain alcohol dehydrogenase of unknown specificity |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0285855 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCACTA CATCCGAGAA CGCACCCGTC GCGCTGGTCA CCGGCGCCAA CAAGGGCATC
GGCCTCGAGA CGGTCCGGCG CCTGGTCGAG GCCGGGTACC GCGTCTATCT GGGCGCCCGC
AGCAAGGAAC GGGGACAAGC CGCCGCCGAA GCCGTCGGCG CACACTTCCT CGAGCTCGAC
GTGACCTGCG ACGCATCGGT CCGTCCCGCC GTGGCCTTTG TCGAGCAGGC TGACGGGCAC
CTCGACGTGC TGGTCAACAA TGCCGGTATC ACCGGTCCGG TGCGTGACCC TCACGACTAC
ACCGCGGACG ACATCACCGA AGTGCTGCTG ACCAACGTCG TTGGCTACGT TCGCCTCATC
CATGCCTTCC TGCCGCTGCT CGAGAAGAGC GACGCCCCGC GGATCGTGAA CGTAGGCAGC
GGTCTGGGAT CGTTCGGACT CTTCCACGAC ATGGGCCGCA TCGAAGCGCA GGCGGGCACG
CCGCCCTACG CGGCGTCAAA GGCAGCAATC AACATGCTGA CCGCTCGCCT GGCCCGGCTC
CTGCCCCACA TCCGCATCAA CGTCGCGGAC CCCGGCATGA CCGCAACCGA TCTCAGCGGC
GGCGAGGGCC ACTCGGTCCA CGACGGCACC GACGCCATCC TCGCCTTCGC TCTTGGCGCA
CCTTGCGGCC CCAGCGGCAC CTTCGCCGAT CGCGACGGCG CACTGCCCTG GTAA
|
|---|
| Protein sequence | MGTTSENAPV ALVTGANKGI GLETVRRLVE AGYRVYLGAR SKERGQAAAE AVGAHFLELD
VTCDASVRPA VAFVEQADGH LDVLVNNAGI TGPVRDPHDY TADDITEVLL TNVVGYVRLI
HAFLPLLEKS DAPRIVNVGS GLGSFGLFHD MGRIEAQAGT PPYAASKAAI NMLTARLARL
LPHIRINVAD PGMTATDLSG GEGHSVHDGT DAILAFALGA PCGPSGTFAD RDGALPW
|
|---|
| |