| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_4312 |
|---|
| Symbol | rplB |
|---|
| ID | 5705106 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | - |
|---|
| Start bp | 4876272 |
|---|
| End bp | 4877111 |
|---|
| Gene Length | 840 bp |
|---|
| Protein Length | 279 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641273731 |
|---|
| Product | 50S ribosomal protein L2 |
|---|
| Protein accession | YP_001539084 |
|---|
| Protein GI | 159039831 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0090] Ribosomal protein L2 |
|---|
| TIGRFAM ID | [TIGR01171] ribosomal protein L2, bacterial/organellar |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.00376489 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCAATCC GTAAGTACAG GCCGACGACG CCGGGCCGGC GTGGCTCCAG CGTCGCCGAC
TTCGCCGAGA TCACCCGGTC GACACCGGAG AAGTCGCTGC TGGCGCCGCT GCCGAAGAAG
GGTGGGCGCA ACGCCCACGG CCGGATCACC ACCCGCCACC AGGGCGGCGG CCACAAGCGC
CAGTACCGGA TCATCGACTT CAAGCGGGTC GACAAGGACG GCGTGCCGGC AAAGGTCGCG
CACATCGAGT ACGACCCGAA CCGCACCGCG CGGATCGCGC TGCTGCACTT CCTGGACGGC
GAGAAGCGCT ACATCGTCGC GCCGAAGGAC CTCAAGCAGG GCGACATCGT GGAGTCGGGT
CCGGGCGCCG ACATCAAGCC GGGCAACAAC CTGCCGCTGC GCAACATCCC GGTCGGCACG
ACCATCCACA ACGTGGAACT GCGTCCAGGC GGCGGTGCCA AGCTGGCCCG TTCCGCCGGC
GTCGGTATCC AGTTGCTTGG CCGGGAGGGC GCCTACGCGA CCCTGCGCAT GCCGTCCGGT
GAGATCCGCC GCGTCGACGT GCGGTGCCGG GCCAGCATTG GTGAGATCGG CAACGCCGAC
CAGTCGAACA TCAACTGGGG CAAGGCCGGC CGGATGCGGT GGAAGGGCAA GCGCCCGACC
GTCCGTGGCG TGGCCATGAA CCCGGTCGAC CACCCGCACG GTGGTGGTGA GGGTAAGACC
TCTGGTGGCC GCCACCCGGT CAACCCGCAG GGTAAGCCCG AGGGCCGTAC CCGCCGTAAG
GGCCAGCCGA GTGACCGGCT GATCGTCCGC CGTCGCTACG CCACGCGTAA GCGCGGCTGA
|
|---|
| Protein sequence | MAIRKYRPTT PGRRGSSVAD FAEITRSTPE KSLLAPLPKK GGRNAHGRIT TRHQGGGHKR
QYRIIDFKRV DKDGVPAKVA HIEYDPNRTA RIALLHFLDG EKRYIVAPKD LKQGDIVESG
PGADIKPGNN LPLRNIPVGT TIHNVELRPG GGAKLARSAG VGIQLLGREG AYATLRMPSG
EIRRVDVRCR ASIGEIGNAD QSNINWGKAG RMRWKGKRPT VRGVAMNPVD HPHGGGEGKT
SGGRHPVNPQ GKPEGRTRRK GQPSDRLIVR RRYATRKRG
|
|---|
| |