| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_4286 |
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| Symbol | |
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| ID | 5706998 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salinispora arenicola CNS-205 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009953 |
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| Strand | - |
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| Start bp | 4861451 |
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| End bp | 4862473 |
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| Gene Length | 1023 bp |
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| Protein Length | 340 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641273705 |
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| Product | DNA-directed RNA polymerase subunit alpha |
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| Protein accession | YP_001539058 |
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| Protein GI | 159039805 |
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| COG category | [K] Transcription |
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| COG ID | [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit |
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| TIGRFAM ID | [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.665586 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00623467 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCTCATCT CCCAGCGACC GTCCCTCTCC GAGGAGTCGA TCAACGAGAC CCGGTCCCGG
TTCACCATCG AACCGCTGGA GCCCGGCTTC GGCTACACCC TGGGCAACTC GCTGCGCCGG
ACGCTGCTGT CGTCCATTCC CGGCGCGGCG GTGACCTCGA TCAAGATCGA TGGTGTGCTG
CACGAGTTCA CCACGATCCC GGGGGTCAAG GAGGATGTGG TCGAACTCGT CATGAACATC
AAGGAGCTGT GCGTCAGCTC CGAGCATGAC GAGCCGGTCA GCATGTACCT GCGCAAGCAG
GGCCCGGGTG ACGTGACCGC GGGTGACATC CAGCCCCCGG CCGGTGTCTC GGTACACAAC
CCGGACCTGA AGCTCGCCAC CCTGAACGGT AAGGGCCGGC TCGACATGGA GCTGACCGTC
GAGCGGGGCC GTGGTTACGT CACCGCGGCG CAGAACAAGC AGGCCGGCGC CGAGATCGGT
CGGATCCCGG TCGACTCGAT CTACTCACCG GTACTGCGGG TCACCTACCG GGTCGAGGCG
ACCCGAGTCG AGCAGCGGAC CGACTTCGAT CGGCTGATCA TCGACGTCGA GTCCAAGCCG
TCGATGGGGC CACGTACGGC CCTGGCCTCG GCCGGCTCCA CGCTGGTCGA ACTCTTCGGC
CTGGCCCGCG AGCTGGACGA GACCGCGGAG GGTATCGACA TCGGGCCGTC CCCGCAGGAC
GCCCAGCTGG CGGCGGACCT GGCGCTGCCG ATCGAGGAGC TGGACCTCAC CGTCCGCTCC
TACAACTGCC TCAAGCGCGA GGGCATCAAC TCCGTTGGTG AGCTCATCGG GCGTACCGAG
GCTGACCTCC TCGACATCCG TAACTTCGGT CAGAAGTCGA TCGACGAGGT CAAGATGAAG
CTCGCCGGGA TGGGACTGGG GCTGAAGGAC TCGGCCCCGA ACTTCGACCC GGCGAACGTC
GTGGACGCCT TCGGTGAGGC TGACTACGAC ACCGAGGACT ACCGCGAGAC TGAGCAGCTG
TAA
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| Protein sequence | MLISQRPSLS EESINETRSR FTIEPLEPGF GYTLGNSLRR TLLSSIPGAA VTSIKIDGVL
HEFTTIPGVK EDVVELVMNI KELCVSSEHD EPVSMYLRKQ GPGDVTAGDI QPPAGVSVHN
PDLKLATLNG KGRLDMELTV ERGRGYVTAA QNKQAGAEIG RIPVDSIYSP VLRVTYRVEA
TRVEQRTDFD RLIIDVESKP SMGPRTALAS AGSTLVELFG LARELDETAE GIDIGPSPQD
AQLAADLALP IEELDLTVRS YNCLKREGIN SVGELIGRTE ADLLDIRNFG QKSIDEVKMK
LAGMGLGLKD SAPNFDPANV VDAFGEADYD TEDYRETEQL
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