| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_3646 |
|---|
| Symbol | |
|---|
| ID | 5703340 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | - |
|---|
| Start bp | 4206889 |
|---|
| End bp | 4208418 |
|---|
| Gene Length | 1530 bp |
|---|
| Protein Length | 509 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641273071 |
|---|
| Product | polymorphic outer membrane protein |
|---|
| Protein accession | YP_001538435 |
|---|
| Protein GI | 159039182 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01376] Chlamydial polymorphic outer membrane protein repeat |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.749989 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.00730149 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACGCGGC CGGACGGCCG CCACCGCTTC GTCAGGAGCG CGGACCGACC GACACGAAGG
TTGACCATGA TGCCGGACCA CGCACGGCCA CCAGGAACAC CCCGCGGGCG GCGCCTCGCC
CGGACAGCCA CAACACTGGG CGTGGCGACT CTCGCCAGCC TGACGACCGT GGCCGCCACC
GGAACCATGA GCCTCGCCCA CACATCAGGG GCGCTTGCTC GAGCTTCCGT GTCCGAGGGC
GACGGCGGCG CGCCAAACCC GGGCAAGGGT GGCCCGGAAC GGCACCGGGA CAGCTCCGCC
GAGGGCGACC GGGGTGGCGA GAAGAGCGCC GCCGGTGATC CGGGCTGGCA CCGCGACGAC
CACGGTGACC ACAAGGCCAA GGGCACCCCC GTGCCCTGTG ACCCCAACGC GCTCATCGCC
GCGATCACCG CCGCGAACCA GGCCGGCGGA GGCACCCTGC GCCTGGCCGA GAAGTGCCGC
TACACCCTGA CCGTCAACCA GGACGACAAC GGACTGCCCC CCATCTTCCA ACCCATCACG
ATCCACGGCC AGGGCGCCAC CATCATCCGC GCCGCCGCCG CCGACAACTT CCGCATTTTC
AACGTCACCA CCGGCGGCGA CCTCACCCTC AAAGACCTCA CCGTCGCCGG CGGACGAGTC
GAGGGCGCCA ACACCGACGG CGGCGGGATC TTCGCCGGTG AGGGCACCAG GCTGACCCTT
GAACGTGTCA CCGTCCGCAA CAACATGGCC CTCGGCAACA ACGGTGACGG CGGCGGCATC
TCCGGCGACC GCAGCAAGGT CACGATCACC AAGAGCACCA TCACCGACAA CACCGCTGCC
GACGAAGGCG GTGGCGTCTC CAGTGACAAC GGTGCCTTCA CCATCAGCAA GTCGAAACTG
ACCCACAACA CCGCCGGCAC CACTGGCGGC GGATTCTCCA ACGACGACGG CACCGCCACC
ATCAGCCACA CCGTGATCAG CGACAACAGC GCCACCGACG GCGGCGGCGT GGACAACGAC
GGCGATGTGA CCGACATTGT CCACAGCACC ATCACCCGCA ACACCGCCAG CGCACTCGGC
GGCGGCATCT ACGACAACAG CAACGACAGT CTGCTGCTGC GGCACACCAC CGTCGCCAAG
AACACCGCCA CCTCCGGCGG CGGGATCTAC ACCACCGGCA GCATCGGCGC CACCATCGAG
GACAGCAAGA TCGTGCACAA CATCGCCACC ACCGGCGACG GCGGCGGCAT TTCCATCAAC
GGCCCGAACG GCCCGGTAGT GGCCCTGCGT CGGAGCACCG TCTCCGACAA CCAGGCCACC
GGCCGCGCCG GCGGCATCTT CTTCAACCCA CCCGACGACA CCCTGCTGAC CCTCACCGAC
GTCCGCGTCA CCAAGAACCT CGCCCAACTC GAACCCGGCG GTATCTACAA CAACGGCACC
GTCATCGTCC TGGGCAAGAC CACCATCATC GACAACCGAC CCACCAACTG CGTCGGCAGC
CCCAACCCCG TACCCACCTG CTTCGGCTGA
|
|---|
| Protein sequence | MTRPDGRHRF VRSADRPTRR LTMMPDHARP PGTPRGRRLA RTATTLGVAT LASLTTVAAT
GTMSLAHTSG ALARASVSEG DGGAPNPGKG GPERHRDSSA EGDRGGEKSA AGDPGWHRDD
HGDHKAKGTP VPCDPNALIA AITAANQAGG GTLRLAEKCR YTLTVNQDDN GLPPIFQPIT
IHGQGATIIR AAAADNFRIF NVTTGGDLTL KDLTVAGGRV EGANTDGGGI FAGEGTRLTL
ERVTVRNNMA LGNNGDGGGI SGDRSKVTIT KSTITDNTAA DEGGGVSSDN GAFTISKSKL
THNTAGTTGG GFSNDDGTAT ISHTVISDNS ATDGGGVDND GDVTDIVHST ITRNTASALG
GGIYDNSNDS LLLRHTTVAK NTATSGGGIY TTGSIGATIE DSKIVHNIAT TGDGGGISIN
GPNGPVVALR RSTVSDNQAT GRAGGIFFNP PDDTLLTLTD VRVTKNLAQL EPGGIYNNGT
VIVLGKTTII DNRPTNCVGS PNPVPTCFG
|
|---|
| |