| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_1440 |
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| Symbol | |
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| ID | 5708063 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salinispora arenicola CNS-205 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009953 |
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| Strand | - |
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| Start bp | 1666405 |
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| End bp | 1668003 |
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| Gene Length | 1599 bp |
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| Protein Length | 532 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641270949 |
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| Product | RNA polymerase sigma factor |
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| Protein accession | YP_001536330 |
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| Protein GI | 159037077 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00316128 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGACAGAAC CCCGCCAGAC CGGCGCCGAC GTTCGCTCGC TCACCGACAC CTTGATCGCG
CACGCGCAGA GCGCCGGCGG TCAGCTCACG TCGGCTCAGC TCGCGCGCAC TGTCGAGGCT
GCCGAGGTGA CTCCGGCCCA GGCCAAGAAG ATCCTCCGGG CGCTCTCGGA CGCGGGGGTG
ACCGTCGTGG TTGACGGTTC GGCCACCACC GCCCCGCGCC GCCGGGTGGC CGCCGCCCGG
TCGACCACCC CTGCTTCCCG GGCCACCACC GCCAAGACCA CCAAGAAGAC CACCACGCCC
GCGCCGAAGC AGACCCCTGC CGAGGCGACG GCCCCGGCGC CACGGAAGGC CACCGCCCGC
AAGGCGGCCG GCACCACCAC CGCCGCGGCC GCCAAGGCGG CGCCGGCGAA GAAGGCCACT
CGGGCCACCA AGGCGACGGT GGCCGCGGCG ACGGGCCCGG CCAAGGCCAC GAAGTCCGCT
GCGAAGGGTG AGGCCGGTGG CGAGGTCGAC CCGGAGGAGT TGGCCGCCGA GATCGAGGAC
GTGGTGGTCG ACGAGCCGGC GGAGCTGACC CAGGCTGCCG AGGCCGACGC GGCGAACTCC
GCCACCGACA ACGACTTCGA GTGGGACGAC GAGGAGTCCG AGGCGCTCAA GCAGGCCCGC
CGGGACGCGG AGCTGACCGC TTCCGCCGAC TCCGTCCGGG CGTACCTGAA GCAGATCGGC
AAGGTCCCGC TGCTCAACGC CGAGCAGGAG GTGGAGCTCG CCAAGCGGAT CGAGGCCGGC
CTGTACGCCG CTGAGCGGTT GCGCGCGACC GAGGAGGGCG AGGAGAAGCT CAACCGCGAC
ATGCAGCGCG ACCTGATGTG GATCTCGCGA GACGGGGAGC GGGCGAAGAA CCATCTCCTG
GAGGCGAACC TGCGCCTCGT GGTGTCGCTC GCCAAGCGGT ACACCGGCCG TGGGATGGCC
TTCCTCGACC TGATCCAGGA AGGCAACCTC GGCCTGATCC GCGCGGTCGA GAAGTTCGAC
TACACCAAGG GCTACAAGTT CTCCACCTAC GCCACCTGGT GGATCCGCCA GGCCATCACC
CGCGCCATGG CCGACCAGGC CCGCACCATC CGCATCCCGG TACACATGGT CGAGGTGATC
AACAAACTTG GCCGGATCCA GCGCGAGCTG CTCCAGGACC TGGGCCGCGA GCCCACCCCG
GAGGAGCTGG CAAAGGAGAT GGATATCACA CCGGAGAAGG TGCTGGAGAT CCAGCAGTAC
GCCCGGGAGC CGATCTCACT CGACCAGACC ATCGGCGACG AGGGCGACAG TCAGCTCGGT
GACTTCATCG AGGACTCCGA AGCCGTGGTC GCGGTTGACG CGGTCTCGTT CTCGCTTCTC
CAGGACCAGC TCCAGCAGGT GCTCCAGACG TTGTCCGAAC GTGAGGCCGG CGTGGTCCGC
CTCCGGTTCG GCCTGACCGA CGGTCAGCCG CGCACGCTTG ACGAAATCGG CCAGGTCTAC
GGGGTGACCC GGGAGCGCAT CCGACAGATC GAGTCCAAGA CGATGTCCAA GCTGCGCCAC
CCGTCCCGGT CCCAGGTCCT CCGGGACTAC CTGGACTGA
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| Protein sequence | MTEPRQTGAD VRSLTDTLIA HAQSAGGQLT SAQLARTVEA AEVTPAQAKK ILRALSDAGV
TVVVDGSATT APRRRVAAAR STTPASRATT AKTTKKTTTP APKQTPAEAT APAPRKATAR
KAAGTTTAAA AKAAPAKKAT RATKATVAAA TGPAKATKSA AKGEAGGEVD PEELAAEIED
VVVDEPAELT QAAEADAANS ATDNDFEWDD EESEALKQAR RDAELTASAD SVRAYLKQIG
KVPLLNAEQE VELAKRIEAG LYAAERLRAT EEGEEKLNRD MQRDLMWISR DGERAKNHLL
EANLRLVVSL AKRYTGRGMA FLDLIQEGNL GLIRAVEKFD YTKGYKFSTY ATWWIRQAIT
RAMADQARTI RIPVHMVEVI NKLGRIQREL LQDLGREPTP EELAKEMDIT PEKVLEIQQY
AREPISLDQT IGDEGDSQLG DFIEDSEAVV AVDAVSFSLL QDQLQQVLQT LSEREAGVVR
LRFGLTDGQP RTLDEIGQVY GVTRERIRQI ESKTMSKLRH PSRSQVLRDY LD
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