| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_1304 |
|---|
| Symbol | ispG |
|---|
| ID | 5703684 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | + |
|---|
| Start bp | 1512857 |
|---|
| End bp | 1514029 |
|---|
| Gene Length | 1173 bp |
|---|
| Protein Length | 390 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641270815 |
|---|
| Product | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase |
|---|
| Protein accession | YP_001536196 |
|---|
| Protein GI | 159036943 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis |
|---|
| TIGRFAM ID | [TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0620226 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCGCTG TCAGTCTCGG TATGCCCGCC GTGCCGCCGC CACCGCTCGC GTCCCGTCGG
GCGAGCCGAC AGATCATGGT CGGCCCGGTG CCGGTCGGTG GGGGAGCACC GGTGTCGGTG
CAGTCGATGA CCACCACGCT CACCGCCGAC GTGAACGCCA CGCTCCAGCA GATCGCCGAG
CTGACCGCCG CCGGTTGCCA GATCGTCCGG GTTGCCGTAC CCAGCCAGGA CGATGTCGAG
GCGTTGCCGG CGATCGCCCG GAAGTCGCAG CTCCCGGTGA TCGCCGACAT CCACTTCCAG
CCCCGCTACG TCTTCGCCGC GATCGAGGCC GGCTGCGCGG CGGTGCGGGT GAACCCGGGC
AACATCCGGC AGTTCGACGA CAAGGTCAAG GAGATCGCGA AGGCCGCCGG CGACGCGGGC
GTGCCGATCC GGATCGGCGT GAACGCGGGC TCGCTGGACA AGCGGCTGCT GGCCAAGCAC
GGCAAGGCGA CCGCGGAGGC GCTCGTCGAG TCGGCGCTGT GGGAGTGCTC GCTCTTCGAG
GAGCACGGCT TCCGGGACAT CAAGATCTCG GTGAAGCACA ACGACCCAGT GGTGATGGTC
CGGGCGTACC GGCAACTCGC CGAGGCGTGC GACTACCCGC TGCATCTCGG GGTGACGGAG
GCCGGGCCGG CGTTCCAGGG CACCGTCAAG TCGGCGGTGG CCTTCGGCGC GCTGCTCGCC
GAGGGGATCG GCGACACCAT CCGGGTGTCG CTGTCCGCCC CGCCGGTGGA GGAGATCAAG
GTCGGCACCG CGATCCTGGA GTCGCTGGGC CTGCGCGAGC GCGGTCTGGA GATCGTCTCG
TGCCCGTCCT GCGGGCGGGC CCAGGTCGAC GTGTACAAGC TCGCCGAGGA GGTGACCGCC
GGCCTGGAGG GGTTGCCGGT GCCGTTGCGG GTCGCCGTGA TGGGCTGTGT GGTCAACGGC
CCCGGCGAGG CCAGGGAGGC CGACCTGGGG GTGGCCTCCG GCAACGGCAA GGGCCAGATC
TTCGTCAAGG GCAAGGTCAT CAAGACCGTC CCGGAGGGGC AGATCGTGGA GACCCTCATC
GAGGAGGCGC TTCGTCTCGC CGATGAGATG GGCGCCGAAC TGCCCGACGA GCTGCGGAGT
CTGGTCGGCG GCGCCACCGT GACCGTGCAC TGA
|
|---|
| Protein sequence | MTAVSLGMPA VPPPPLASRR ASRQIMVGPV PVGGGAPVSV QSMTTTLTAD VNATLQQIAE
LTAAGCQIVR VAVPSQDDVE ALPAIARKSQ LPVIADIHFQ PRYVFAAIEA GCAAVRVNPG
NIRQFDDKVK EIAKAAGDAG VPIRIGVNAG SLDKRLLAKH GKATAEALVE SALWECSLFE
EHGFRDIKIS VKHNDPVVMV RAYRQLAEAC DYPLHLGVTE AGPAFQGTVK SAVAFGALLA
EGIGDTIRVS LSAPPVEEIK VGTAILESLG LRERGLEIVS CPSCGRAQVD VYKLAEEVTA
GLEGLPVPLR VAVMGCVVNG PGEAREADLG VASGNGKGQI FVKGKVIKTV PEGQIVETLI
EEALRLADEM GAELPDELRS LVGGATVTVH
|
|---|
| |