| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_1178 |
|---|
| Symbol | |
|---|
| ID | 5703529 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | + |
|---|
| Start bp | 1325679 |
|---|
| End bp | 1326542 |
|---|
| Gene Length | 864 bp |
|---|
| Protein Length | 287 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641270696 |
|---|
| Product | formamidopyrimidine-DNA glycosylase |
|---|
| Protein accession | YP_001536077 |
|---|
| Protein GI | 159036824 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0266] Formamidopyrimidine-DNA glycosylase |
|---|
| TIGRFAM ID | [TIGR00577] formamidopyrimidine-DNA glycosylase (fpg) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.437814 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.0000509999 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGCCTGAGC TGCCTGAGGT CGAGACCGTT CGGCAGGGGC TGGCCCAGTG GGTCACCGGC
CGGCGGATCG CCGAGGTCGA GGTGCGGCAC CCCCGGGCGA TACGTCGGCA CCCGGCCGGT
GCCGCCCACT TCGCCGACGT GCTTGTCGGG ACGACCGTCC GGGACGTACG GCGACGCGGC
AAGTACCTGT GGCTTCCGTT GGACAGTGGC GACGCGGTGA TCGGGCACCT CGGCATGTCG
GGGCAACTGC TCCTGCAGCC GGGTGCGGCA CCGGACGAAG CCCACCTGCG GGTGCGGTTC
CGGTTCGCCG ATGACGGGCC CGAGTTGCGC TTCGTCGACC AGCGGACCTT CGGCGGGCTG
TCGGTCAGTG CGGGGGGCGC GGAAATGCCC ACGGAGATCG CGCACATCGC GCGGGATCCG
CTGGACCCCG AGTTCTCCGA GGCCGCCTTC GTCGCGGCGC TACGCCGCCG CCGCACCGAG
GTCAAGCGGG CTCTGCTGGA TCAGACGTTG CTCTCGGGCG TGGGCAACAT CTATGCCGAC
GAGGCGCTGT GGCGGGCCCG GTTGCACGGC GCCCGGCCGG CTGACGGGCT GACCGGCCCC
GCCGCGTTGC GTCTGCTCGG GCACGTCCGG GACGTGCTCG GTGAGGCGAT CAAGGAGGGC
GGAACAAGCT TCGACGCCCT GTATGTCAAC GTCAACGGTG AAAGCGGCTA CTTCGACCGT
GCCCTGAACG TGTACGGGCG GGCGGACCAG CCGTGCCGGC GGTGCGGTAC GCCGGTGCGC
CGCGAGGCGT TCATGAACCG GTCGTCGTAC AGCTGCCCGC GCTGCCAGCC GCGGCCCCGC
AGGGCGCTCC AGGCCAGCGG CTGA
|
|---|
| Protein sequence | MPELPEVETV RQGLAQWVTG RRIAEVEVRH PRAIRRHPAG AAHFADVLVG TTVRDVRRRG
KYLWLPLDSG DAVIGHLGMS GQLLLQPGAA PDEAHLRVRF RFADDGPELR FVDQRTFGGL
SVSAGGAEMP TEIAHIARDP LDPEFSEAAF VAALRRRRTE VKRALLDQTL LSGVGNIYAD
EALWRARLHG ARPADGLTGP AALRLLGHVR DVLGEAIKEG GTSFDALYVN VNGESGYFDR
ALNVYGRADQ PCRRCGTPVR REAFMNRSSY SCPRCQPRPR RALQASG
|
|---|
| |